Leisingera methylohalidivorans: METH_18900
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Entry
METH_18900 CDS
T02961
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
lmd
Leisingera methylohalidivorans
Pathway
lmd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lmd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
METH_18900
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lmd03019
]
METH_18900
03400 DNA repair and recombination proteins [BR:
lmd03400
]
METH_18900
Enzymes [BR:
lmd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
METH_18900
Messenger RNA biogenesis [BR:
lmd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
METH_18900
DNA repair and recombination proteins [BR:
lmd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
METH_18900
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
Rhodanese
ResIII
Motif
Other DBs
NCBI-ProteinID:
AHD02410
UniProt:
V9VYG7
LinkDB
All DBs
Position
complement(3719932..3721989)
Genome browser
AA seq
685 aa
AA seq
DB search
MTVPAALTGASPILREIFGFDAFRPGQEEIVDAVTAGENVLAIMPTGGGKSLCFQLPALL
REGVTVVISPLIALMRDQVRALQEAGVTAGALTSGNTDEETEAVWEAIEAGRLKLLYMAP
ERLASGAAMGMLRRIGVSLIAVDEAHCVSQWGHDFRPDYLRIGELRRALDVPLAAFTATA
DQETQEEIVQKLFDGEAPRSFLRGFDRPNIHLAFAAKDSPRRQILEFAAARKGQSGIVYC
GTRAKTEALSAALREAGHSACFYHGGMEAEDRRIVETRFAREDGLIVVATVAFGMGIDKP
DIRWVAHADLPKSIEAYYQEIGRAGRDGAPAETLTLFGPDDIRLRRTQVDEGLAPPERRA
ADHARLNALLGLAEALRCRRQKLLAYFGEAAEPCGNCDLCDTPADVFDGTTVVRKALSAV
LRTEEWFGSGHLIDILLGADNERIRAKRHDQLSVYGCGKEFGKRQWQAVFRQMMGHDLLR
PDPERHGALRFTEAALPILRGEQSIELRRDTIKSADRRPAVKALVSEEDAPLLSALKAKR
RALAEAQKVPAYVIFPDRTLIEMAETRPETLDRMARISGVGAKKLERYGDDFLDVITGAA
EQLHPARRKLAGREAGPAYDRLLEVQAQLARGGCGTLKPLTCSASLLAKVAQMRSDDEAG
ITRLLGERRAERFAAAFLDVLRGAG
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
atgacagtcccggcagccctgacaggcgcgtccccgatcctgcgcgagattttcggcttt
gacgccttccgccccgggcaggaggagatcgtcgacgccgtgaccgcgggcgaaaacgtg
ctggcgatcatgcccaccggcggcggcaaatccctgtgcttccagctgcccgcgctgctg
cgcgagggcgtcaccgtggtgatctcgccgctgattgcgctgatgcgcgatcaggtccgc
gccctgcaggaggcgggcgtcaccgccggcgcgctcacctccggcaacacggatgaggaa
accgaagccgtctgggaagcaatcgaggccgggcggctgaaactcctctacatggcgccg
gaacggctcgcctcgggcgcggcgatggggatgctgcggcggatcggcgtcagcctgatt
gcggtggacgaggcccattgcgtcagccagtggggccatgatttccgccccgattacctg
cgcatcggcgagctgcgccgcgcgctggatgtgccgctggccgccttcaccgccaccgcc
gatcaggaaacccaggaagaaatcgtccagaagctgttcgacggcgaggcgccgcgcagc
ttcctgcgcggatttgaccggcccaacatccacctcgcctttgccgccaaggacagcccg
cgccgccagatcctggagttcgccgccgcccgcaagggccagtccggcatcgtctactgc
ggcacccgcgccaagaccgaagcgctgtccgccgccctgcgcgaggccggccattccgcc
tgtttctaccacggcggcatggaggccgaggaccgccgcatcgtggaaacccgctttgcc
cgcgaggatgggctgatcgtggtcgccaccgtcgccttcggcatggggatagacaagccc
gacatccgctgggtcgcccatgccgacctgccgaaatccatcgaggcctattatcaggaa
atcggccgcgcggggcgcgacggcgcacccgccgaaaccctcaccctgttcggccccgac
gacatccgcctgcgccgcacccaggtggatgaagggctggccccgccggaacgccgcgcc
gccgaccatgcccggctgaacgcgctgctgggattggccgaggcgctgcgctgccgccgc
cagaaactcttggcctatttcggcgaggcggcggagccttgcggaaattgcgacctctgc
gatacgccggccgatgtgttcgacggcaccaccgtggtcaggaaggcgctgtctgccgtg
ctcaggaccgaggaatggttcggctccggccatctgatcgacatcctcttgggcgctgat
aacgagcggatccgcgccaagcgccatgaccagctgtcggtctatggctgcggcaaggag
ttcggcaaacgccagtggcaggcggtgtttaggcagatgatgggccacgacctgctgcgc
cccgatccggaacgccacggcgcgctccgctttaccgaagcggcgctgccgatcctgcgc
ggcgagcagtcgatcgagctgcgccgcgacaccatcaaatccgccgaccgccgcccggcg
gtcaaggcgctggtctcggaagaggacgcgccgctgctgtcggcgctgaaggccaagcgg
cgtgcattggccgaggcgcagaaagtgccggcctatgtgatcttccctgaccgcaccctg
atcgagatggccgagacccgcccggaaaccctggaccggatggcccgcatcagcggtgtc
ggcgccaaaaagctggagcgctacggcgatgattttctggacgtgatcaccggggcggcg
gaacagctccacccggcgcgccgcaagctggcgggacgcgaggcggggccggcttatgac
cggctgctggaggttcaggcgcagctggcgcgcggcggctgcggcacactgaaaccgctg
acctgttcggcctcgctcctggccaaggtggcgcagatgcgcagcgatgacgaggccggg
atcacaaggctgttaggggagcgccgcgccgaacgtttcgcggcggcgtttctggacgtc
ctgcgcggcgcgggctag
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