Leisingera methylohalidivorans: METH_19215
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Entry
METH_19215 CDS
T02961
Name
(GenBank) exodeoxyribonuclease III
KO
K01142
exodeoxyribonuclease III [EC:
3.1.11.2
]
Organism
lmd
Leisingera methylohalidivorans
Pathway
lmd03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
lmd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
METH_19215
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lmd03400
]
METH_19215
Enzymes [BR:
lmd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
METH_19215
DNA repair and recombination proteins [BR:
lmd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
METH_19215
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
Exo_endo_phos_2
Motif
Other DBs
NCBI-ProteinID:
AHD02471
UniProt:
V9VUP9
LinkDB
All DBs
Position
complement(3786901..3787689)
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AA seq
262 aa
AA seq
DB search
MPFTLATWNINSVRLREPIVQKLLQEEGPDVLCLQECKSPVEKIPLEGFAALGYGHVVAR
GQKGYNGVAILSRLPIEDAGDQDFAGLGHARHVAGRLENGVVIHNFYVPAGGDVPDREKN
VKFGQKLDYLTEMRDWFQSDKPEKSILVGDLNIAPREDDVWDHKKLLKVVSHTPIEVEHF
AEVMDAGGWSDVTRNDVPDGRLYSWWSYRARDWDAADKGRRLDHVWATPDIKNAAHSSRI
LRDARGWEKPSDHAPVFATFDL
NT seq
789 nt
NT seq
+upstream
nt +downstream
nt
atgccatttactcttgccacctggaatatcaattcggtccgcctgcgcgaaccgattgtg
cagaagctgttgcaggaggaggggccggacgtgctctgcctgcaggagtgcaaaagcccg
gtggagaagattccgttggaaggctttgcggctctgggctacggccatgtggttgcgcgc
ggccagaaagggtacaacggggtggcgatcctgtcgcgcctgccgatcgaggatgcaggg
gatcaggatttcgcaggtcttggccatgcccgccatgtggccgggcggctggagaacgga
gtggtgatccacaatttctacgtcccggcgggcggtgatgttccggaccgggaaaagaat
gtgaaattcggccagaaacttgattaccttacggaaatgcgcgactggttccagtcggat
aaaccggaaaagtccattctggtcggcgacctcaatatcgccccccgcgaggatgatgtc
tgggaccacaagaagctgctgaaggtcgtcagccatacgcccatcgaggtggagcatttc
gcagaagtgatggacgcgggcggatggtctgatgtgacccggaacgatgttcccgacggc
cgcctgtacagctggtggagctaccgggccagggattgggatgccgccgacaagggacgc
cgtctcgatcacgtctgggcgacgccggacatcaagaacgcggcccactccagccgtatc
ctgcgggatgcccgcggctgggaaaaacccagcgaccatgcgccggtgtttgcgaccttc
gatctgtga
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