Leisingera methylohalidivorans: METH_19725
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Entry
METH_19725 CDS
T02961
Name
(GenBank) 3'-5' exonuclease
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
lmd
Leisingera methylohalidivorans
Brite
KEGG Orthology (KO) [BR:
lmd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
lmd03016
]
METH_19725
Enzymes [BR:
lmd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
METH_19725
Transfer RNA biogenesis [BR:
lmd03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
METH_19725
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNase_H_2
CNOT1_HEAT
RNase_T
DNA_polI_exo1
Phage_integrase
Motif
Other DBs
NCBI-ProteinID:
AHD02557
UniProt:
V9W067
LinkDB
All DBs
Position
3881969..3882583
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AA seq
204 aa
AA seq
DB search
MANHLYKNDLPDGLDLGPVVAIDCETMGLNPHRDRLCVIQMSGGDGNAHIVQVEKGQTEA
PNLCRMLEDPNVLKLFHFGRFDIAAMHHAFGALAAPVYCTKIASRLVRTYTDRHGLKNLT
QELLAIDISKQQQMSDWGAEELTEAQLDYAASDVLHLHKLRKALDKRLAREGRTEMAQAC
FDFLPMRAKLDLAGWPEIDIFAHS
NT seq
615 nt
NT seq
+upstream
nt +downstream
nt
gtggccaaccacctgtacaagaacgatctgcccgacgggctggacctcggccccgttgtc
gccatcgattgcgagaccatgggcctgaacccgcaccgtgaccggctttgcgtgatccag
atgtcaggcggtgacggaaatgcccatatcgtccaggtcgaaaaaggccagaccgaagca
cccaacctatgccggatgctggaagacccaaatgtgctgaaattattccactttggccgc
ttcgacattgccgccatgcaccacgcattcggcgccctcgcggccccggtttattgcacc
aagatcgccagccgcctggtccgcacttacaccgaccgtcatggtctcaagaacctgacc
caggaactcttggccatcgacatatccaaacagcagcagatgagcgattggggtgctgaa
gaactgaccgaagcacagctcgactatgctgcctccgacgtgctccacctccacaagctg
cgtaaagcgctggacaagcgcctcgcccgcgaaggccgtaccgaaatggcgcaagcctgc
tttgattttctccccatgcgtgccaagctggacctggccggctggcccgaaatcgacatt
tttgctcactcatga
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