Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293: LEUM_0625
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Entry
LEUM_0625 CDS
T00411
Name
(GenBank) Predicted hydrolase of the metallo-beta-lactamase superfamily
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
lme
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
Pathway
lme03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lme00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LEUM_0625
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lme03019
]
LEUM_0625
Messenger RNA biogenesis [BR:
lme03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LEUM_0625
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
RNase_J_b_CASP
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
ABJ61738
UniProt:
Q03YI4
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Position
591382..593211
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AA seq
609 aa
AA seq
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MTDLSIIPFGGVRENGKNMYAVTVNDEIFILDAGLKYPETDQLGVDVVVPDFEYLIKNTE
KIAGVFLSHGHADAIGALPYFLQQVNVPIFGSELTIELAKLAIKDQPALKDYNDYHIINE
KSEIDFGNVKVSFFNTTHSIPESLGIVIGTEYGQVVYTGDFKFDQTAESYYRTDIPRLVE
VGQRKVLALLADAAGTEGGADSVNESKIGDYILETFRDNKKKRIIVAAVASNIQRIQQII
DATAATKRKLVLSGNDIENVVRTAIKLKKLQLPLPESQLFVSLKNMKSLVAHETVILETG
RMGEPIKHLNRMANGEDAHIKIGSDDLVFITTTPSTAMESVVAKTRDMIFKQGADVKQIS
TDMRSSGHASRNDLQMMLNIMQPAYFMPIQGEYRVMSAAKDAAEEVNLPEDHILMAMKGD
QFKLIDGQFELKDSFAIGETLIDGSGIGDIGNVVLRDRRILSEDGVFVSVVTIDRKKRQV
VSKPKLTSRGFVYVKANRDLMKEASDLTVKQIEDYLTNNKSFDWNELKAGVRDVLSRFLF
EQTRRRPMVMPVVMEVNQNRRPNNHKTTPTQSGAQASKKPAQKKLATPNSNKKKVRRPAK
KNVQSKTTE
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
atgacagatttaagtattattccctttggcggagtccgcgaaaatgggaaaaacatgtat
gccgtcacagttaatgacgagatttttatattggacgcaggattaaagtatccagaaaca
gaccagcttggtgtagatgtagtggtgccggattttgaatatttgattaagaatactgaa
aaaattgcgggcgttttcttgtcacacggacacgcggatgcaattggtgctttgccgtat
tttttgcagcaagtcaatgtaccgatttttggatccgaactaacaattgaattagctaag
ctagcaataaaagatcagccggcactaaaagattataatgattaccacattattaatgaa
aaaagtgaaattgactttggtaatgttaaagtatccttctttaataccacacattcaatt
ccagaatcactaggtattgtaattggtactgaatatggccaagttgtgtatactggcgat
tttaagtttgatcaaacagcagaaagttactatcgtactgatattcctcgtttagtagaa
gttggtcagaggaaagtattggctttattggctgatgctgctggtacagagggtggagct
gattcagttaatgaatcaaagattggcgattatatattagaaacgttccgtgacaacaaa
aaaaagcgcattattgtagcggccgttgcttcgaatattcaaagaattcagcaaattatt
gatgccactgctgcgacaaaacgtaagcttgtcttatcaggaaatgatatcgaaaatgtt
gtacggacagctatcaaattaaaaaagttgcagttacctttgccagaaagtcaactattc
gtcagtttaaaaaatatgaagagtttagttgcccatgaaacggttattttagaaacaggc
cgcatgggggaaccaattaagcatttgaaccgcatggcaaatggcgaagacgctcacatt
aagattggctcagatgatcttgtgtttattaccacaacaccttctacagccatggaaagt
gttgtagcaaaaacacgcgatatgattttcaagcaaggtgctgatgtgaagcagattagc
actgatatgcgttctagtggtcatgcatcacgaaatgatttacaaatgatgcttaacatc
atgcaaccagcgtactttatgcctattcaaggagagtatcgtgtgatgtcagcagctaaa
gatgctgctgaagaggttaatttacctgaagatcatattttgatggcaatgaagggggat
caatttaagttaattgacggccaatttgagttaaaagattcttttgctattggtgaaacg
ttgattgatggatccggtattggcgatattggtaacgtggtcttgcgtgatcgtcgtatt
ttgtctgaagatggtgtttttgtttctgttgtgacaattgatcgtaaaaaacgtcaagtt
gtatcaaaaccaaagttaacatcacgtggatttgtttatgttaaagcaaatcgtgattta
atgaaagaagcttctgatttaaccgttaaacagattgaagattatttaactaacaataaa
agttttgattggaatgagctaaaagccggtgttcgcgatgtattgtcacgtttcttattt
gagcaaacaagacgccgacctatggttatgcctgtagttatggaagttaaccaaaatcgc
agaccaaataaccataaaacaacgccgacacaatctggtgctcaagcaagcaaaaaacca
gcacaaaagaaactggcaacacctaatagcaataaaaaaaaggttcgccgtccagcaaaa
aagaacgtacaaagtaaaactactgaataa
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