Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293: LEUM_1623
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Entry
LEUM_1623 CDS
T00411
Name
(GenBank) RNase J1
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
lme
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
Pathway
lme03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lme00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LEUM_1623
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lme03019
]
LEUM_1623
Messenger RNA biogenesis [BR:
lme03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LEUM_1623
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
ABJ62715
UniProt:
Q03VQ7
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All DBs
Position
1620143..1621825
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AA seq
560 aa
AA seq
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MTYSVDIKPNEVAVYALGGLGEIGKNTYGIEYQNEIIVVDAGIKFPEDELLGIDYVIPDY
TYLVDNIDRVKALVITHGHEDHIGAIAYFLQAVNVPVYAGPLAMALIKNKLEEKQMLNRV
ELHEITDGSVLEFDQLSVEFFRTTHSIPDVFGVAVHTPVGTIVETGDFKFDLTPTTKQPP
NLWSMARIGENGVLLMMSDSTNAERPEWTKSEAWVAKSVNHIFDKIQHGRIIFATFASNM
NRVRMATDAAIAHGRKIAVFGRSMESAVTNGRALGYLNIPDDMLVEQSEIKHIPDDELLI
LSTGSQGEPMAALARIAEGTHKQIRLKPKDNVIFSSSPIPGNTASVNAVINKLQEGGANV
IYGKVNNIHTSGHGGQEEEKLMIALLKPKFFMPVHGEYRMLKVHASLAHELEVPEDHTFI
LENGDVLALDGENARVAGHFPGDDTYIDGSGIGDIGSVVLHDRQKLSQDGLVVVTATIDL
KKKEILSGPDILSRGFVYMRESGDLINEGRRVIFSTMRRVMNSSNNSESDIRQAVIDDLS
RFLFKETARKPMIMPMLILV
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atgacatattctgtagatatcaaacctaacgaagtcgcagtttatgcgctaggcggttta
ggcgagattggtaagaacacgtacggtatcgagtaccaaaatgaaattatcgtcgtcgac
gcgggcattaagttcccagaagacgaattgctcggtattgattacgttattcctgactat
acttatttagttgataatatcgatcgcgttaaagcactggttatcacccacggacacgaa
gaccatatcggtgcaatcgcctactttttgcaagctgttaatgttccagtttacgctggc
ccattagcaatggcattaattaagaacaaactcgaagaaaaacagatgcttaatcgcgtc
gaacttcatgaaattactgatggctcagtactggaatttgatcagttaagtgtcgagttt
ttccgtaccactcactctatacctgacgtatttggtgtagctgtacacacaccagttggg
actattgtagaaactggtgattttaagtttgatctgacaccaactactaagcagccacct
aacctttggtcaatggcacgtattggcgaaaatggtgtattactcatgatgagtgattca
accaatgctgaacgccctgaatggacgaagtcagaagcatgggtagcaaaatctgttaac
catatatttgataaaattcaacatggacgtattatatttgcaacgtttgcttctaatatg
aaccgtgttcgcatggctacagatgcagctattgcacatgggcgtaaaattgcggtattt
ggccgttcaatggaatcagctgttactaatggtcgtgccttgggatatctaaatatccct
gatgatatgctggtcgaacaatcagaaatcaaacatattcctgacgatgaattacttatt
ctatcaactggttctcaaggtgaaccgatggctgccctggcacgaattgctgaaggaaca
cataagcaaattcgtttgaagccaaaagacaatgttattttctcctcttcaccaattcca
ggtaatacagcatctgtaaacgctgttattaataaattacaagaaggtggcgctaatgtc
atctacggtaaagttaataacatccacacttctggtcacggtggtcaagaagaagaaaag
ttaatgattgctttgttgaagcctaaatttttcatgcctgttcacggtgaatatcgtatg
ttaaaagtccacgcttcattagcacatgagctagaagtaccagaagaccatactttcatt
ttagaaaatggtgatgtcttggctctggatggtgaaaatgcacgcgttgctggacatttc
cctggcgatgacacatacattgacggatcaggaatcggtgatatcggttcagttgtgtta
catgatcgtcaaaagctgtcacaagatggcttagttgttgttactgcaacaatcgatttg
aaaaagaaagagattttatctggaccagatattttatcacgtggttttgtctatatgcgt
gaatctggcgatttgattaatgaaggtcgacgtgtcattttcagcacaatgcgccgcgtt
atgaatagttcaaacaatagcgagtcagatattcgtcaagctgttattgatgacttgtct
cgtttcctattcaaagaaacagctcgcaaaccaatgattatgccaatgctaattttggtt
taa
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