Leptotrichia mesophila: AB8B23_05960
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Entry
AB8B23_05960 CDS
T10902
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lmes Leptotrichia mesophila
Pathway
lmes03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lmes00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AB8B23_05960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lmes03019
]
AB8B23_05960
03009 Ribosome biogenesis [BR:
lmes03009
]
AB8B23_05960
Enzymes [BR:
lmes01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AB8B23_05960
Messenger RNA biogenesis [BR:
lmes03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AB8B23_05960
Ribosome biogenesis [BR:
lmes03009
]
Prokaryotic type
rRNA helicases
AB8B23_05960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_30
Helicase_RecD
Cas3-like_C_2
AAA_19
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
XDU65694
UniProt:
A0AB39VEJ5
LinkDB
All DBs
Position
complement(1160177..1161886)
Genome browser
AA seq
569 aa
AA seq
DB search
MQRFEDFGLSTEMLNALSKKGFEEPSEIQKLVVPELLKERTHLIGQAQTGTGKTAAFGIP
ILETIEADKTVRALILAPTRELANQVADEIYSLKGTKDLKVLAVYGGASIENQIKKLKSG
IDIVVGTPGRIMDLMRKKVLKVDNLDYFVLDEADEMLNMGFLEDIEAILEKTNDEKKMLF
FSATIPKAIMAIAKRFMPEHKLLKVEKKELTTNLTEQIYYEVKQEDKFEALCRVLDYEQD
FYGIVFCRTKSEVDDVTNKLKARNYDAECIHGDITQALRQKALDLFKKKILTILVATDVA
ARGIDVSNLTHVINYSIPQEAESYVHRIGRTGRAGQKGIAITFVTPREASKLAQIKRITK
TDIKRENIPNVEEILEAKKEALIAYVDEIIKENDFDAYSELAEKLIDGRDPKQVLASVLR
HVYEDEFLPDNYNEIEDVKVKINDKTRLFIALGSKDGYNVGRLLDLLNKKAKTPGRKVKD
VKIMDKYSFITVPLQEAEYIMRALNSKKDAKPLVEEATGGRNGGEKSSKKSDKRRNRKGR
KKSSNKKSSKGKKDSKKDKKDKKTKKAKK
NT seq
1710 nt
NT seq
+upstream
nt +downstream
nt
atgcaaagatttgaagattttggattaagtacagagatgcttaatgctttaagtaaaaaa
ggatttgaggagccaagtgaaatacaaaaattggtagtccctgaattattaaaggaaaga
acgcacttaataggacaagctcagacaggaacaggaaaaacagccgcatttggtattcca
attttagaaacaattgaagctgataaaacagttagagctttaattttagctccaacaaga
gaacttgccaatcaagttgccgatgaaatttattcattaaaaggaacaaaggatttaaaa
gtgcttgctgtttatggtggggcttcaatagaaaaccagataaaaaaattaaaatctgga
atagatattgttgttggaacacctggacgtataatggacttaatgagaaaaaaagtacta
aaagttgacaatttagattattttgtattggatgaagccgatgaaatgctaaatatggga
tttttggaagacatcgaagcaattttagaaaaaactaacgatgagaaaaaaatgttattc
ttctcagcaacaatccctaaagcaattatggcgattgccaaaagatttatgccagaacac
aaattattaaaagttgagaaaaaagaacttactactaatttgactgaacaaatttactat
gaggtaaaacaggaagataaatttgaagctttatgcagagttcttgattatgaacaagat
ttttatggaattgtattttgccgtacaaaatctgaagtagatgatgttacaaataaatta
aaagctcgaaactacgatgcagagtgtattcatggagatattacccaagcacttagacaa
aaagcacttgatttattcaagaaaaaaatattgacaatattagttgcaacagatgttgct
gcacgtggaattgacgtaagtaatctgacacacgttattaactactctattccgcaagaa
gccgagtcttatgttcatagaataggtagaacaggtcgtgccggtcaaaaaggtatcgca
ataacatttgtaactccaagagaagctagcaagcttgctcaaattaaacgtatcacaaaa
acagacattaagagagaaaatattccaaacgtagaagaaattttagaagcaaaaaaagaa
gcattaattgcttatgtagatgaaatcattaaagaaaacgattttgatgcatactcagaa
ctagctgaaaaattaatagatggaagagatccaaaacaagttcttgcttctgtattaaga
catgtttatgaagacgaattcttgcctgataattataatgaaatcgaagatgtaaaagtc
aaaattaatgataagacaagactatttattgcacttggaagcaaagatggctacaatgta
ggaagattgcttgacttattaaataaaaaagcaaaaacaccaggaagaaaagtaaaagat
gtaaaaattatggataaatattcttttattacagttccattacaagaagcagaatacata
atgcgtgctttaaattccaaaaaagatgccaaaccacttgttgaagaagctacaggagga
agaaacggtggagaaaagtctagcaaaaaatcagataaaagaagaaatagaaaaggaaga
aaaaaatcttccaataaaaagtcatcaaaaggaaagaaagatagcaaaaaagataaaaaa
gataaaaaaactaaaaaagcaaaaaaatag
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