Leptotrichia mesophila: AB8B23_08750
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Entry
AB8B23_08750 CDS
T10902
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
lmes Leptotrichia mesophila
Brite
KEGG Orthology (KO) [BR:
lmes00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
lmes03009
]
AB8B23_08750 (rlmD)
Enzymes [BR:
lmes01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
AB8B23_08750 (rlmD)
Ribosome biogenesis [BR:
lmes03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
AB8B23_08750 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Cons_hypoth95
Methyltransf_15
TRM5-TYW2_MTfase
MTS
Methyltransf_25
N6_N4_Mtase
PrmA
Methyltransf_11
Methyltrans_SAM
Methyltransf_32
FtsJ
PCMT
Methyltransf_12
Motif
Other DBs
NCBI-ProteinID:
XDU64017
UniProt:
A0AB39V9U5
LinkDB
All DBs
Position
complement(1717844..1719277)
Genome browser
AA seq
477 aa
AA seq
DB search
MEKTEKKSLKKGDLIQLKIVNLDTKGRAYGFFDQNKIYVNINAAENQVVEGIFVKRRRKY
ELIHCKIIDFAGRQNVIYDDIARQNGGCNYQYYTYDEQLEIKSGHIKKELDKIIKYDYIF
EEPVRSVKPDKYRNKMEFSFGNAIKGGPIILGLHKQNSFHDIVEVDGLKLMDDNFNKIYV
FCNEFCKKTGFDFYHRLDHIGFFRNLVIRKAEFTKQILVNIVTTTQISEIEKKKFQKEFK
EGLLALNLDDDFKITGILHTFNDNFSDMVISESETILYGKRDLTEKIFGLKFKISPYSFF
QTNSQTVEKLYGKVLTYLEEIENIKIDEATVFDLFSGTGTIGQIVSKKAKQVYGIELVPE
AVEKANENTKLNNIQNAHFIAGDVFVKLDEFDNDGIKPDILILDPPRAGVGEKTITKLVK
YNTKNIIYVSCNPKTLMTNLIKFGEFGYRLVRCSVVDMFPVTPHLEVVCLLEKVEQQ
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaaacggaaaagaaaagtttgaaaaaaggagacttgatacagttaaaaattgta
aatctcgatactaagggcagagcctatggcttttttgatcaaaataaaatttatgtgaat
attaatgctgcagaaaatcaagttgttgagggaatttttgtaaaaagacggagaaagtat
gagctgatacattgtaaaattattgactttgctggaaggcaaaatgtgatatatgatgat
attgcaagacaaaatggaggctgtaactatcagtattacacctatgatgagcagcttgaa
ataaagtcagggcatataaaaaaagaattagacaagattattaagtatgactatattttt
gaagagcctgtcagaagtgtaaagcctgataaatatagaaacaagatggaatttagcttt
ggaaatgctataaaaggagggcctataattttagggcttcataagcagaacagttttcac
gatattgtagaagttgatgggttaaaattaatggatgataattttaataaaatttatgtt
ttttgtaatgaattttgtaaaaagacaggttttgatttttatcacaggttagatcatata
ggtttttttagaaatcttgtaattagaaaggcagaatttacaaaacagattttggtaaat
attgtaacaacgactcaaattagtgagatagaaaagaaaaaatttcaaaaagagtttaag
gaaggattgttagccttaaatttagatgatgattttaaaattactggaattttacacaca
tttaatgataatttttcggatatggttatttccgaaagtgaaacgattttgtatggaaaa
cgtgatttgacagagaagatttttggattaaaatttaaaatcagcccatacagttttttt
cagacaaattcccagacagtcgaaaaattatacggaaaagtcttaacatatcttgaagaa
attgaaaatattaaaattgatgaagcaacagtttttgatttattcagtggtactggtaca
atcgggcaaattgtttcaaaaaaggcaaagcaggtttatggaatcgaattagtgccagaa
gccgtagaaaaggctaatgaaaatacaaaattaaataatatccagaatgcacattttatc
gcaggagatgtttttgtaaaattggatgaatttgataatgatggaatcaagccagatatt
ttaattttggatccgccacgtgctggtgtaggtgaaaaaactatcacaaagctggtaaaa
tacaatactaaaaatataatttatgtgtcttgtaatccaaaaactttgatgacaaatctg
ataaagtttggggaatttggatacaggctggttaggtgttcggtggtggatatgttcccg
gttacaccgcatttagaggttgtttgcttgctggaaaaagtagaacagcaatga
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