Leptotrichia mesophila: AB8B23_10415
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Entry
AB8B23_10415 CDS
T10902
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
lmes Leptotrichia mesophila
Pathway
lmes03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lmes00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AB8B23_10415
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lmes03019
]
AB8B23_10415
Messenger RNA biogenesis [BR:
lmes03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AB8B23_10415
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Asparaginase_C
Anti-Pycsar_Apyc1
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
XDU64330
UniProt:
A0AB39V9H3
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All DBs
Position
complement(2088525..2090396)
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AA seq
623 aa
AA seq
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MSEKEKNEFGSQTFKRNFSKKEEINKIKSGMKRFRRKSTNRRHLDEKNEIRYIPRVNDRN
RHIDKEVDGKEEKMYVIPLGGIEEVGKNMTAFQYKDEIIVVDAGLTFPEDEHLGIDVIIP
DFSYLESNRHKIKGLLLTHGHEDHIGAIPYFYQKLGTENIPMYGGRLTLALAKAKFEKKD
AKLPKEKVISGRTILKVSKYFTVEFISVTHSIADCYAICIKTPAATILHSGDFKVDLTPV
DGEGFDFGRLAQLGEEGVDLLLSDSTNAQIPGFTPSERTVGESLKDEFAKADGRIILAAF
ASHVHRLQQIVNIALKHGRKIAIDGRSMVKIFEICSNLGYLKIPKDIMIDIDKVETYPAD
RVLILCTGTQGEPLAALSRIANGTHKYISLREGDTVVISATPIPGNEKAATKNINQLMKR
NADVVFEKGIGIHVSGHGCQEEQKLMLNLVKPKFFLPVHGEYAMIKKHKELAVAVGVPEK
NVILSENGAKLELSKTKFRTAGKVPSGATFIDGFGIGDIGNAVLKDRQNLADDGIVIISI
SQYRNGKFNKQVELVTRGFVYNKDAESLLSETKELIKMELSSMENEGIKEIGKIKQRIRA
KIGEFLNKETDREPIILPIIMEV
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaaaaagaaaaaaatgagttcggaagtcaaacttttaaaagaaacttttctaaa
aaagaagagattaataaaataaaatctggaatgaaaagatttagaagaaaaagcacgaat
cgaagacatttagatgaaaaaaatgaaatacgttatattccaagagtaaacgacaggaat
agacatatagacaaggaagtggatggaaaagaagaaaagatgtatgtaattccacttgga
ggtattgaggaagttggaaaaaatatgacagcttttcaatataaagatgaaattattgta
gtggatgcagggctcacttttccagaagatgagcatttggggatagatgtcataattcca
gatttttcatatctagaatcaaacagacacaaaataaaaggcttacttttgacacatgga
catgaagatcatataggagcaatcccttatttttaccaaaaattagggacagaaaatata
ccgatgtatggtggaagattaacacttgctcttgcaaaagcaaaatttgagaaaaaagat
gcaaaattaccgaaagaaaaagtaattagtgggagaacaatcttaaaagtctcaaaatat
tttacagttgaatttataagtgtaacacacagtattgcagactgttatgcaatttgtata
aagactccggcagcaacaattttacattctggagattttaaggtagacttaacgcccgtt
gatggagaaggatttgattttggaagattggctcagttaggtgaagaaggtgtagattta
ttgctatcagatagtacaaatgcacaaattcctggatttacaccatcagaaagaacagtt
ggggaaagcttgaaagatgaatttgcaaaggctgatggaagaattattttagctgcattt
gcttcacatgtgcatagattacagcaaatcgtaaatattgcattaaaacatggaagaaaa
attgcaatcgacggaagaagcatggtaaaaatctttgaaatctgttcaaatcttggatat
ttaaaaataccgaaagatataatgattgatattgataaagttgaaacttatccagctgac
agagtgcttattttgtgtactggaacacaaggggagcctcttgctgcgctttcaagaatt
gcaaatggaacgcacaaatatatttcactaagggaaggggatacagttgtaatttcggca
acgcctattcctggaaatgaaaaagcggcaacaaaaaatataaatcagcttatgaaacgt
aatgcagatgttgtatttgaaaaaggaattggaatacacgtatcaggacatggatgccag
gaagaacagaaacttatgttaaatctagtaaaacctaaatttttccttcctgtacatgga
gaatatgcaatgataaaaaaacataaggaattggcagttgcagtaggagtacctgaaaaa
aatgttattttatcagagaatggagcaaaactggaattgtcgaaaactaaattcagaaca
gcaggaaaagtacctagtggtgcaacatttatcgatggatttggaattggggatattggg
aatgctgtgttgaaagatagacaaaatctggcagatgacggaatagttattatttcgatt
tctcaatatagaaatggtaagtttaataaacaagttgagcttgtaacacgtggttttgtg
tataataaagatgcagaaagcttattatcagaaacaaaagagctgattaagatggaactt
agcagcatggaaaatgaaggaataaaagagattggtaagattaaacagagaataagagcg
aaaataggagagttcctaaataaagaaacagatagagagcctattattttaccaattata
atggaggtttag
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