Listeria monocytogenes F2365 (serotype 4b): LMOf2365_2422
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Entry
LMOf2365_2422 CDS
T00174
Name
(GenBank) putative ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
lmf
Listeria monocytogenes F2365 (serotype 4b)
Pathway
lmf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lmf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LMOf2365_2422
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lmf03019
]
LMOf2365_2422
03016 Transfer RNA biogenesis [BR:
lmf03016
]
LMOf2365_2422
Enzymes [BR:
lmf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
LMOf2365_2422
Messenger RNA biogenesis [BR:
lmf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LMOf2365_2422
Transfer RNA biogenesis [BR:
lmf03016
]
Prokaryotic type
tRNA degradation factors
LMOf2365_2422
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
S1CSD-TOTE-2
RNase_II_C_S1
OB_cyt-4
OB_RNR_1st
S1_RRP5
SH3_VIII-1_N
Motif
Other DBs
NCBI-ProteinID:
AAT05188
LinkDB
All DBs
Position
complement(2475146..2477497)
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AA seq
783 aa
AA seq
DB search
MNLLTSAPDKTFALEDLEIEIALNNADDFKLMVKALVKLEDSGTIVRSRKNRYALPEKMD
LVKGTFRAHERGFGFVLPEEKEMDDIFIPPNEVKDAMNGDLVFATITKRKGDNLAEGTIK
KIVERKTTQIVGTYMEDLAGTPIVMPDDKRLFGEVEIDLEDGLKPVDGHKVIVELTEYAT
GHARARGVVKSIIGHRNDPGVDILSIIHKHGISIGFPEEVMEQVSKAPDVVDDSDIGNRR
DLRDQMIITIDGADAKDLDDAVTVKQLPNGNWKLGVHIADVTHYVTEGSPLDVEAQERGT
SVYLVDRVIPMLPHKLSNGICSLNPQVDRFTMSCEMEIDEEGHVVNHEIFESIIKTTERM
TYTDVNDILVEKDEALREKYAPIVPMLEKMQDLAEILRRKREKRGAIDFDFKEARVVVDE
DGHPEAVVMRERSAGEHLIEEFMLAANETVAEHFHWMDVPFIYRIHEDPKEDKLARFFEF
ITNFGLIVKGTANDIHPAALQQVLEEVKGKPEEMVVSTVMLRSMQQAKYDTVSAGHFGLS
TDFYTHFTSPIRRYPDLIVHRLIREYLINGDVRPETLEKRAEELPEIAEHSSKMERRAVE
AERETDELKKTEFMVDKVGERFIGIISSVTNFGLFIELPTTIEGLVHVSAMKGDYFKFHQ
NQLAMIGERTGQIYRIGDEVEVEVTKVDVDAREIDFALRSEGKPGPVSDKQKRQREKPID
KTRNFKSNQKKGRNKRRAGKSEDVKPKSERKEDEWHTKPKKKKKKKPFYQGVAKESPKKK
KRR
NT seq
2352 nt
NT seq
+upstream
nt +downstream
nt
atgaatctattaacttcagcgcctgataaaacatttgcgcttgaagatttggaaatagaa
atagctttaaacaatgcggatgactttaaattaatggtgaaagctttagtgaaactggaa
gattccggaactattgtccgctcaaggaagaatcggtatgcattaccagaaaaaatggac
ttagtaaaaggaacatttcgcgcgcatgaacgaggttttggctttgttctcccggaagaa
aaagaaatggacgatatttttatcccaccaaatgaagtaaaagatgcaatgaatggcgat
ttagtttttgcaacgattacgaaacgtaaaggcgataatttggcagaggggacgattaag
aaaattgtcgaacggaagacaacgcaaatcgtcggaacttatatggaagacttagctggt
actccaattgtgatgccagatgacaagcgactttttggtgaagtggaaattgatttagaa
gacggcttaaaaccagttgatgggcataaagttatcgttgaattgacggaatatgcaact
gggcatgcgcgtgcaagaggggttgttaaatcaatcatcggtcaccgtaatgatccagga
gtggatattttatcgattattcataaacacggtatttcaatcgggttcccggaagaagta
atggagcaggtaagtaaagcgccggatgtggtggatgattcggatattggtaaccgtcgt
gatcttcgtgaccaaatgattattacgattgacggggcagacgctaaagatttagatgat
gctgttactgttaagcaactaccgaatggcaactggaagctgggcgttcatattgcggat
gtaacgcattatgtgacagaaggctcgccgcttgatgtcgaagcgcaagaacgtggaacg
agtgtttatttggttgaccgcgtaattccgatgttgccacataaactatcgaacggaatt
tgctcgcttaacccacaagtagatcgttttactatgagttgtgaaatggaaatcgatgaa
gaaggtcatgtggttaatcacgaaatttttgaaagtattattaaaacaacagaacgtatg
acgtatacggatgtaaatgatattttagttgaaaaggacgaagctttacgggaaaaatat
gcgccaattgttccaatgcttgaaaagatgcaagatttggccgaaatacttcgtcgtaaa
cgtgaaaaacgtggcgcgattgattttgactttaaagaagcacgtgtagttgttgatgaa
gacggtcatccagaagcagtcgttatgcgcgaacgttcagcgggagagcatttgattgaa
gaatttatgcttgctgccaatgaaacagttgcagagcatttccactggatggatgtacca
tttatttaccgtatccatgaagatccaaaagaagataaattagcgcggttctttgaattt
attacgaactttggtttgattgtgaaggggactgctaacgatattcacccagctgcttta
caacaagtactagaagaagtaaaaggtaaaccagaagagatggttgtttcgactgttatg
ctgcgttcgatgcaacaagcgaagtatgacacagtaagcgccggacactttggtttgtct
actgatttttatacacatttcacgtcaccaattcgtcggtacccggacttgattgttcac
aggttgattagagagtatttaattaacggggatgttcgtccggaaacgttagaaaaacgc
gctgaggagcttcctgagattgctgaacacagctcgaaaatggagcgccgtgccgttgaa
gcagagcgcgaaacagatgaactgaagaaaacggaatttatggtcgacaaagtgggcgaa
cgtttcatcggaatcattagttcggtaaccaattttggcttatttatcgaacttccaact
acgattgaaggtttagttcatgtgagcgcaatgaaaggcgattacttcaaattccaccaa
aatcaattagcgatgattggcgaaagaacaggccaaatttatcgtattggtgatgaagtg
gaagtcgaagtaaccaaagtagacgtggatgctcgtgaaatcgattttgcgcttcgtagt
gaaggtaaaccaggtccagtgagcgataaacaaaaacgccaacgcgaaaaaccgattgat
aaaacaagaaatttcaagagtaaccagaaaaaaggtcgtaacaaacgtagagctggtaaa
tcagaagacgtgaaaccaaaatcagaacgtaaagaagacgaatggcatacaaaacctaaa
aagaaaaagaagaaaaaacctttttatcaaggtgtagcaaaagaaagcccgaagaagaaa
aaacgtcgctag
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