Listeria monocytogenes FSL R2-561: LMKG_00039
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Entry
LMKG_00039 CDS
T01985
Name
(GenBank) ATP-dependent nuclease
KO
K16898
ATP-dependent helicase/nuclease subunit A [EC:
5.6.2.4
3.1.-.-]
Organism
lmg
Listeria monocytogenes FSL R2-561
Brite
KEGG Orthology (KO) [BR:
lmg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lmg03400
]
LMKG_00039
Enzymes [BR:
lmg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LMKG_00039
DNA repair and recombination proteins [BR:
lmg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
LMKG_00039
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
DEAD
AAA_12
DUF2059
ResIII
AAA_16
Motif
Other DBs
NCBI-ProteinID:
AEO26614
LinkDB
All DBs
Position
complement(2372915..2376622)
Genome browser
AA seq
1235 aa
AA seq
DB search
MSLNIPPKPEESLWTDDQWKAIQAKGNNVLVAAAAGSGKTAVLVTRIIEKLIDESANLNV
DELLIVTFTNASAAEMKFRIGKGLEEALGQNPDSAHLKRQVALLNYASISTLHSFCLEII
RKYYFEADIDPSFRLIEPIESSMIRDEVLEGLLEQEYGIENNEAFFHLVESFTGDRSDAE
LHSLISKLYDFSRANPDPNAWLEAMVNFYNTEEITSITELPYFPIIKEDIELRVNQAKNY
LLNAINYANENNGPAPYLATLENDLVQIQALSELNWSSWTHLKTSIENIDFKRIPTLKNK
SDYDEVYVEEAKKFRDAAKKEMKNIATDWFSREEVNCLSDLEKMKPDIQTLSELVKKFSA
NFFEEKQQRGVLDFNDLEHLALKILLNDDKASEVAQNYQKQFKEVLIDEYQDTNMVQETI
LRLVTNPSEAQGNLFMVGDVKQSIYRFRLAEPTLFMTKYQTFQQDGSGNGIRIDLSQNFR
SRKEVLDATNFIFRQLMDKHIAEIDYDTAAELTLGANFPETNAMETELLLIDMKTEDTET
EDELSPQELQKNQVESRAIAMKIREMIDNKFPIYDKKLKQNRPIQYRDIIILSRAMTSAP
DMEEAMKVQDIPFYANNNSGYFETTEVATMIALMKVVDNPYQDIPLAAVLRSPIIGLNEE
ELGQIRMAKKKGYFYDALLTYKDITVSETANKISDFVQQLNNWRELSIRENLTSLIWQIY
QETNFYEFVGGLPGGKQRQANLRALYDRANQYEKTSFRGLFRFVRFVERLEIRGDDLGTA
KTLGEKEDVVRMMTIHASKGLEFPVVIVSGLSRKFNMRDIYSKTLLDKDYGFASSYRDVE
KMIVYPTIMQQAIKQKKSREMIAEEMRVLYVALTRAEEKLILVATVPDFEKTSKNWLQVA
KEKETILPAATRAKAKCYLDWIGNATIRHPAFKELLCEEIIQTLATEMKLQIEIKTKEMF
LTNELERAESDNWLENIKEHQPVPIQSPYKDEIQRYMEYEYQNEAATEIRAKQSVTELKR
QFSLQDSWSDTTLLKEFQKVSLDRPKFLQKNKLSATEIGTAMHTLMQAVSLDYKPTKEDL
EQLLHTMREKDILTDVQIKAINIKQILDFFESPLGETMLQKKDLVKREVPFSYLLPVSEL
YEKVDLDERVLIQGVVDSMIEEEETITLIDYKTDKIEGRYADWNAAEKVMKERYHIQIKL
YAEAIQAISGKKVAAAYLYFFDGQHICQINTKEGL
NT seq
3708 nt
NT seq
+upstream
nt +downstream
nt
atgagtttaaatataccgccaaaaccagaagagtcattatggacagacgaccaatggaaa
gccattcaagctaaaggcaataatgtacttgttgctgctgctgctggttctgggaaaaca
gctgtcctagtcactagaatcattgaaaagttaatagatgagtcagcaaacttaaatgta
gacgagttactaattgtaacttttacgaatgcttcggctgctgaaatgaagtttagaata
ggaaaaggactggaagaagctctgggacaaaatccagattcagcacatctaaaaagacaa
gtagcattacttaactatgcttctatttcaactctccattctttttgtttagaaattatt
cgaaaatactattttgaggcagatattgatccaagttttcgcttaattgagccaattgaa
agtagtatgattcgcgatgaggttttagaaggtttgctggaacaagaatatggtattgaa
aataatgaagctttttttcatttggtagaatcttttacaggagatcgttcggatgcagaa
ttgcactcattaatatctaagctatatgatttctcaagggccaacccagatccaaacgct
tggttagaagcaatggtgaacttttataatacagaagagattacttcgattacagagtta
ccttattttccaattattaaagaagatattgaattaagagtaaatcaagctaaaaactat
ttactaaacgcaataaattatgcaaatgaaaataacgggccagcaccttatttagctaca
ttagaaaatgatttagtccaaattcaagcattgtcagagttgaactggagcagttggacc
catctgaaaacatctattgaaaacatagatttcaagcgtattccgacacttaaaaataaa
agtgattacgatgaagtatatgtggaggaagcgaagaaatttcgagatgcagctaaaaaa
gaaatgaaaaatatcgcaactgactggttttcgagggaagaagtaaattgcttatctgac
ttagaaaaaatgaaaccagatattcaaactttgagtgaattggtcaaaaaattttctgca
aatttctttgaagaaaaacaacaaagaggggtattagactttaacgatttagaacattta
gcattaaaaattttattaaatgatgataaagcttcagaagttgctcaaaattatcaaaaa
caatttaaagaagtattaatcgatgagtatcaagataccaatatggtgcaagaaactatt
ctacgccttgtaacgaaccctagtgaagcgcaggggaatctattcatggttggagatgtg
aaacagtctatctatcgctttcgtttagcagagccaacattatttatgacaaagtaccaa
acattccaacaagatggtagtggaaacgggatacgcattgatttgtcacagaactttagg
agtaggaaagaagttttagatgctaccaattttatatttcgtcaattgatggataaacac
attgctgaaattgattatgataccgccgcagaattgactttaggtgcaaatttccctgaa
acaaacgctatggaaacggaacttttactaattgatatgaaaactgaggataccgaaaca
gaagatgaattatcgcctcaagaattgcaaaaaaatcaagtagaatcacgtgcgattgca
atgaaaatcagagaaatgatagacaataagtttcctatttatgataaaaaacttaaacaa
aatagacctattcaatacagagatatcattattttatcaagggcaatgacgagcgctccg
gatatggaagaagcaatgaaagttcaagatatccctttttatgcgaataataactcaggt
tattttgaaacaacagaagtagctacaatgattgcacttatgaaagtagtagataaccct
taccaagatattccgcttgctgcggttttacgttcacccataattggcttaaatgaagaa
gagttggggcaaattcgtatggcgaagaagaagggttatttctatgacgcattgctaacc
tataaggacataaccgtttcggaaacagcgaataaaattagtgattttgttcaacaatta
aacaattggcgtgaattgtccattcgagaaaatttaacgtcattgatatggcaaatctat
caagaaactaacttttatgaatttgtgggtggcttaccaggtggcaaacaacgccaagcg
aatttacgagcattatacgaccgggccaaccaatatgaaaaaacatctttccgtggtctg
ttccgttttgttcgttttgttgaacggttagaaattcgaggcgatgatttaggtaccgca
aaaacacttggtgaaaaagaagatgttgttcgcatgatgacaatccatgcgagtaaagga
ttagaatttcctgtagttattgtttctgggctaagtcgaaaatttaatatgcgggatatt
tatagcaaaacgttgttagataaagattatggctttgcatctagttatcgagatgttgag
aaaatgattgtttacccaacaattatgcagcaagcaataaagcaaaagaaatctcgtgaa
atgattgcggaagagatgcgcgtgttgtatgttgcgcttactcgtgcagaagaaaagttg
attttagtagcaacagtaccggattttgaaaaaacaagtaaaaactggctgcaagtcgca
aaagaaaaagaaactattttacctgcagccacaagagcgaaagcgaaatgctatttggat
tggataggaaacgcaacgattaggcatcctgcttttaaagaattgttgtgtgaagaaata
atccaaacacttgcgacggagatgaaactacaaattgaaataaaaacaaaagaaatgttt
ctaactaatgagctagaaagggctgaatcagataattggctggaaaatataaaagaacat
cagccagtacctattcaaagcccatataaggacgaaattcagcgatatatggagtatgag
taccaaaatgaagcggcgactgaaatacgtgctaaacagtctgtaacagagcttaagcgc
caattttctttgcaagatagctggagtgatactacactgttaaaagaattccaaaaagta
tcactggatagacctaaatttttacaaaaaaataaactctctgcaacagaaattggtacg
gcaatgcatacgcttatgcaagcagtttcgttagattataaaccgacaaaggaagatttg
gaacagcttttacacacaatgcgagaaaaagatatcttaacagatgtgcaaattaaagca
attaatatcaaacaaatattagatttctttgaatctccattaggggaaacaatgctgcag
aaaaaagatttagtaaaacgtgaagtgccatttagttatttgcttcctgtgtcagagtta
tatgaaaaagttgatttagacgaacgagtactcattcaaggtgttgtggatagtatgata
gaagaggaagaaacgattactttaattgattataaaacagataaaatagaaggaagatat
gctgattggaacgctgctgaaaaagtaatgaaagaacgatatcatattcaaatcaagctt
tatgcagaagcgattcaagcgattagcggtaaaaaagtcgctgcggcttatttatatttc
ttcgatggacaacatatatgccaaataaacacaaaggaaggtctttaa
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