Listeria monocytogenes HCC23 (serotype 4a): LMHCC_0139
Help
Entry
LMHCC_0139 CDS
T00801
Symbol
rpoN
Name
(GenBank) RNA polymerase sigma-54 factor
KO
K03092
RNA polymerase sigma-54 factor
Organism
lmh
Listeria monocytogenes HCC23 (serotype 4a)
Pathway
lmh02020
Two-component system
lmh02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
lmh00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
LMHCC_0139 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
LMHCC_0139 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lmh03021
]
LMHCC_0139 (rpoN)
Transcription machinery [BR:
lmh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
LMHCC_0139 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
Sigma70_r4
HTH_23
HTH_3
LacI
HTH_17
HTH_IclR
MarR_2
Sigma70_r4_2
Fe_dep_repress
HTH_11
HTH_Tnp_ISL3
ATG11
HTH_31
HTH_20
HTH_38
HTH_Crp_2
HTH_26
HTH_AraC
MarR
Motif
Other DBs
NCBI-ProteinID:
ACK38501
LinkDB
All DBs
Position
135005..136348
Genome browser
AA seq
447 aa
AA seq
DB search
MRLESNFVQKQQQKQSQKLNMTQQLSQSIAMLQFATADLVAFLEDKALENPLIEVIPGSD
FATDFSYSSRKSTGSSDDTDWLEQIADNKLTLADALKEQLHLMDVTQTQKIIVLYLIESL
NDNGYLQIDLKDVSAALLMDDSSVLEGLEILQSMEPAGVGARDARECILLQIERSPDAPY
IAYDVIQKFFTEFAEKKWKKIAAEMDVSLQDIQEVSDWIQTLNPKPGSEFESERVQYVVP
DLILLQHEDEFAVSLAKQFLPQVRFQEAYYETMRATEEKDVAQFLREKAGEFDWIKKGIE
QRENTLQRVGEAIVSHQKAYFLDNSAHLQPLTLKEVAEELGVHESTVSRAVNGKYMETTN
GVYELKRFFASGLQKKSSENENTGDISSTTIKKLVQEFVAAEDKLKPLSDQKIVDMLAEK
EIQVSRRAIAKYRLELNIPSSSKRKRF
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
gtgcgtttagaatctaatttcgtccaaaaacaacaacaaaagcagtcacagaaattaaat
atgacgcaacaattgtcccagtctattgcaatgcttcaatttgcaacggctgatctagtg
gcatttttagaagataaagcactcgagaacccattaattgaagtgattccaggctcggat
tttgcaacagacttttcttacagtagtcgaaaaagcactggaagttctgatgatacagat
tggctagaacaaatagctgacaataagctgacgttagccgatgcgctaaaagaacagcta
catttaatggatgtaacgcaaacacaaaaaattatcgtcttatatttaatagaaagttta
aatgacaatggttatttacaaatagatttgaaagatgtcagtgcggcgcttttaatggat
gattctagtgtgttagaaggcctagaaatcttgcaaagcatggagccagccggcgttggg
gcaagagatgcgcgtgaatgcattttactacagatcgaacgctcgccggatgctccttat
attgcctatgacgtgatccaaaaattctttacggaattcgcagagaaaaaatggaagaaa
atcgctgcagaaatggatgttagcttgcaagacattcaagaagtttccgattggattcaa
accttaaatccaaagccgggttctgagtttgagtctgaacgcgtacaatacgttgtccca
gatttaattttactccaacacgaagatgaatttgctgtttcactagcaaaacaattcctg
ccgcaagttcgtttccaagaagcatactacgaaacgatgcgagcaactgaagaaaaagac
gtcgcccaatttctgcgcgaaaaagccggcgaatttgattggattaaaaaaggcatcgaa
caacgtgaaaacactttgcaaagagttggtgaggcgattgtcagtcatcagaaagcttac
ttcctagataattccgcgcatttacaaccattaactttaaaagaagtagcggaagagctt
ggtgtacatgaatcaaccgtgagccgtgcggtgaatggaaaatacatggaaacaacgaat
ggtgtgtacgaattaaaacgcttctttgcatctggtttacaaaagaaatcttccgagaac
gaaaacacaggtgatatttcaagtacaaccatcaaaaagctagtacaagaatttgtagca
gcagaagataaattaaaaccactctccgatcaaaagatagtagacatgctcgcagaaaaa
gaaattcaagtttcaagaagagctattgcgaaataccgattagaattaaatattccttct
tcctctaaaagaaaaagattttaa
DBGET
integrated database retrieval system
