Listeria monocytogenes HCC23 (serotype 4a): LMHCC_0918
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Entry
LMHCC_0918 CDS
T00801
Name
(GenBank) exonuclease, SbcC family
KO
K03546
DNA repair protein SbcC/Rad50
Organism
lmh
Listeria monocytogenes HCC23 (serotype 4a)
Brite
KEGG Orthology (KO) [BR:
lmh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lmh03400
]
LMHCC_0918
DNA repair and recombination proteins [BR:
lmh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
LMHCC_0918
Archaeal homologous recombinant proteins
LMHCC_0918
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SbcC_Walker_B
AAA_29
AAA_21
SMC_N
ABC_tran
RsgA_GTPase
adh_short_C2
Motif
Other DBs
NCBI-ProteinID:
ACK39267
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Position
941903..944974
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AA seq
1023 aa
AA seq
DB search
MRPIKLTMQAFGAYAKKEVIDFEKLGTEQIFVISGKTGAGKSTIFDAISFAIFGKANTFD
RESFSMRSHFATDKEITEVTLAFRLKDKIYQISRIPQQEIAKQRGNGTTTSPQKAELYEL
IGDEMKLLASSVRDVNTKMEELIQLNVDQFRQILMIPQGEFRELLVSDSKEKEVILQRLA
HTVYYEKVENLLWEKQKQAEILVVEARKKVAELAELSLPDVEVSGKTTSEISVLQNEAIQ
KEQIILTELENKLSIIRKQTSEAVEKVTLAKEQLLDWQNLNKYTEEVATLEAEKDFYQTM
EVRMNAAKRASNLQSQDALCIRLKEQLEAAEQTEKQVVVETEQVKTQFLHAKKQKEALAE
KEAELEINKRTLFQLEEMEPKILELETVLIQKRRAELDWKETTTLLEKIIDKEQKIATEL
QSVEAKLAEINKAELTYLEVINKRTTLEATIEKEQELVNKRIKMEEWDAAKQTEEQTLAQ
LLIEKAEMERTIKQEETKLEKEQAATIAAHLHEGDACPVCGSQSHPVLAKFGETADLETL
EIAKAKLQEKQLVITTTEKAISQLEWQLNEWADMKEQSLAEIQQTLAENIQLATNLREQI
IQLQSEVAQKETVQATLESLKNKQNETLTEKNKMAHEVEKLHQQVQLTEGKRTYLEQSIP
DELRDKAVFDNKMKELSSKIETHIKQAEQIDALFRQAEKETTRLESTLHSAQKTTVDAKE
ALQVQREIFKEAMKQNDFLSYDAYKQALLSVEELKNLEEKLAEYERKRHLAVSRQADLKE
KLQNKQKPNMEQLEFIMKEKQLELSQSEENTMKQREFVEKRKELVENYQNSIQAVEQAEE
NYADIGLLADAARGKNARRLTFERYILAMFLDTIIHRANHRLSKMTSGRFELQRKMEKAK
GNVQSGLELEVFDEYTGLTRHVKTLSGGESFKTSLALALSLAEVVQEMAGGISLETMFID
EGFGTLDPESLEAAVECLLETQENGRLVGIISHVPELKERISARLEVTATNHGSTTKFIT
ASS
NT seq
3072 nt
NT seq
+upstream
nt +downstream
nt
atgagaccgattaaattaacgatgcaagcttttggggcttatgcaaaaaaagaagttatc
gattttgaaaaattgggaacggagcagatttttgtgatttctggtaaaacaggagctggg
aaatcgacaatttttgatgcgattagttttgcgatttttgggaaagcgaacacatttgac
cgagaaagtttttcgatgcgaagtcattttgcgacggataaagaaataacggaagtaacg
ctagcttttagattgaaggacaagatttaccaaattagccgcattcctcagcaggaaatt
gccaaacaacgtggaaacggaacaaccacttcgccgcaaaaagcagaattatatgagtta
attggtgacgaaatgaagttgcttgcaagttccgtgcgcgatgttaatacaaaaatggaa
gaattaattcaacttaatgtggatcagtttagacaaattttgatgattcctcaaggcgaa
tttagagaactgctcgtatcggatagtaaagaaaaagaagtcatattgcaaagattagcg
catactgtttactatgaaaaagtggaaaatttattatgggaaaagcaaaaacaagccgaa
atcttggttgtagaagcgcgtaaaaaagtagcagagcttgctgaacttagtttaccggat
gtggaagtttctggaaagacaacgagtgaaatcagtgtgttacagaacgaggccattcaa
aaagaacaaataattttaacggaattagaaaataaattaagtattattcggaaacaaaca
agtgaagctgtcgaaaaagtgacgcttgcgaaagaacaactgcttgattggcaaaatttg
aataagtatacagaagaagttgcgacactagaagcggagaaagatttttatcaaacaatg
gaagttcgcatgaatgctgcgaaaagagcaagcaaccttcaatcccaagatgcactttgt
attcgtttaaaagaacaattagaagcagccgaacaaacagaaaaacaagtagtagtcgag
acggaacaagtgaaaacgcaatttttacatgcgaaaaaacaaaaagaagcactcgctgaa
aaagaagcggaacttgaaataaacaaacgaacacttttccaattagaagaaatggaaccg
aaaatcttggaattagaaacagtcttgatccaaaaaagacgcgccgaattagactggaaa
gaaacaacgacccttttagaaaaaataatcgacaaggaacaaaaaatagctacagaactg
caatcagttgaagcgaaattagcggaaataaacaaagcagagctcacgtatttagaagtt
attaacaaacggacaacattagaagccactatagagaaagaacaagaattagttaataaa
cggataaaaatggaggagtgggacgcagccaaacaaactgaagaacaaacattagcacaa
cttttaatagaaaaagcggaaatggaaagaacgattaaacaagaagaaacaaaactagaa
aaagaacaagcggcaacaatcgcagcgcatttgcatgaaggagatgcttgtcctgtctgt
ggttcacagtcacacccagtactcgcaaaatttggagaaacagctgaccttgaaacactc
gaaatagcaaaagcaaagctacaagaaaaacaattagtgattactacgacggaaaaagct
atcagtcaactcgaatggcaacttaatgaatgggcagatatgaaagagcaaagtttagcc
gaaatacaacaaacattagctgaaaatatccaactagctactaatctgagagagcaaata
atccagttgcaatccgaagtagctcaaaaagaaactgtccaagcgacattagaatcattg
aaaaacaaacaaaatgaaacgctaaccgaaaaaaataagatggctcacgaagtagaaaag
ttgcatcaacaagtgcaactaacggaagggaaacgaacttatttggaacaatccattccc
gacgagttgcgagataaggctgttttcgataacaaaatgaaagaactaagctcaaaaatc
gaaacacatatcaaacaagccgaacagattgatgcgttgtttagacaggcagaaaaagaa
acaacaagactagaatctacgttacattcggcgcaaaaaacaacggtggatgcgaaagaa
gccttacaagtacagcgcgaaattttcaaagaagccatgaaacaaaatgattttttatcc
tatgatgcgtataaacaagctttgttatcagtagaagaactaaaaaacttagaagaaaaa
ttggccgaatacgagcgaaaacgccatttagctgtatcacgccaagctgatttaaaagaa
aaactccaaaacaaacaaaaaccaaatatggaacaactagaattcatcatgaaagaaaag
cagctcgaacttagccaatcagaagaaaatacaatgaaacaacgcgaatttgttgaaaaa
agaaaagaacttgtcgaaaactaccaaaacagtattcaggcagtggaacaagccgaagaa
aattatgcggacattggtttactagctgatgcagctcgtggtaaaaatgcccggagatta
acctttgaacgatatattttagcgatgtttttagacacgattattcaccgcgccaaccac
cgtttatccaaaatgacaagcggtcgttttgaactccagcggaaaatggagaaagcaaaa
ggaaacgtccaaagtggcttagaacttgaagtttttgatgagtatacaggattaactcga
catgtaaaaacactttcaggaggagaaagctttaaaacctctttagcgcttgctttatca
ctcgcagaagttgttcaagaaatggcaggtgggatttcacttgaaacgatgtttattgat
gaaggattcgggacacttgatcctgaatcacttgaagccgcggtggaatgtttactggaa
acacaagaaaacggacgcttagttgggattatttcccatgtaccagaactaaaagaacga
atttctgcaaggctagaggtaaccgcaacaaatcacggaagtaccactaaatttattaca
gctagtagctaa
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