Listeria monocytogenes HCC23 (serotype 4a): LMHCC_1239
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Entry
LMHCC_1239 CDS
T00801
Name
(GenBank) polyribonucleotide nucleotidyltransferase (Polynucleotidephosphorylase) (PNPase) (Vegetative protein 15) (VEG15)
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
lmh
Listeria monocytogenes HCC23 (serotype 4a)
Pathway
lmh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lmh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LMHCC_1239
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lmh03019
]
LMHCC_1239
03016 Transfer RNA biogenesis [BR:
lmh03016
]
LMHCC_1239
Enzymes [BR:
lmh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
LMHCC_1239
Messenger RNA biogenesis [BR:
lmh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
LMHCC_1239
Transfer RNA biogenesis [BR:
lmh03016
]
Prokaryotic type
tRNA degradation factors
LMHCC_1239
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
OB_RRP5_4th
RNase_II_C_S1
KH-I_KHDC4-BBP
S1_RRP5
SPATA25
CvfB_2nd
S1_2
RICTOR_M
Mug135_C
Motif
Other DBs
NCBI-ProteinID:
ACK39586
UniProt:
B8DFZ6
LinkDB
All DBs
Position
complement(1278637..1280808)
Genome browser
AA seq
723 aa
AA seq
DB search
MSEKQVFSTEWAGKTLSVEVGQLAKQASGAALIRYGDTVVLTAAVGSKKPRPGDFFPLTV
NYEEKMYSVGKVPGGFLKREGRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSVD
QDCSPEMAAMLGSSVALVISDIPFEGPIAGVDVGRIDGKYVINPTIEQAEKSDISLTVAG
TYDAINMVEAGAKEVSEEAMLEAIMFGHEEIKRLCEFQQQIIAAVGKEKREIELFVSDPE
LEAEVKAASEGKMKAAIKTEEKKAREAAIEEVKEEILESYKAKELENEAEILGEVAHILE
MIEKDEMRRLISQDKIRPDGRKVNEIRPLSSEVGMLPRVHGSGLFTRGQTQALSVCTLAP
LREHQIIDGLGTEEYKRFMHHYNFPQFSVGETGPRRAPGRREIGHGALGERALQYVIPSE
EEFPYTIRLVSEVLESNGSSSQASICGSTLAMLDAGVPIKAPVAGIAMGLVKLGDDYTIL
SDIQGMEDHFGDMDFKVAGTKDGITALQMDIKIDGLSRQILDEALTQAKEGRLHILEHLT
STISAPREELSAYAPKIITLNIKPEKIKDVIGPGGKQINAIIDETGVKIDIEQDGTVYIA
SQDQAMNRKAIAIIEDIVREVEVGEVYTGKVRRIEKFGAFVELFKGTDGLVHISELAHER
VGKVEDILKLGDEVTVKVIEVDQQGRVNLSRKALLEKKEQPEGDKKPQAEKKFYPKTKKP
ESK
NT seq
2172 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaaaaacaagtgttttcaacagaatgggcaggtaaaacattatctgttgaagta
ggtcaattagcaaaacaagcaagtggagcagcattaattcgttacggagatacggtcgtt
ttaacagcggcagtaggttctaaaaaaccacgtccaggcgactttttcccattaacagtt
aactatgaagaaaaaatgtactccgttggtaaagttcccggtggattcttaaaacgtgaa
ggacgtccaagtgaccgtgcaacattaacagcacgcctaattgaccgtccaatccgtcca
ttatttgcagaaggtttccgtaatgaagttcaaattacatctactgtattcagtgtggat
caagattgttctccagaaatggcagcaatgcttggctcttctgttgcattagttatttcc
gatattccatttgaaggaccaatcgctggtgtggatgttggccgtattgacggaaaatac
gttatcaacccaactatcgaacaagcagaaaaaagtgatattagcttaaccgttgcagga
acttatgatgcaatcaacatggtagaagctggagcaaaagaagtttcagaagaagcaatg
cttgaagcaatcatgtttggtcacgaagaaattaaacgtctttgtgaattccaacaacaa
attatcgctgcagttggtaaagaaaaacgcgaaatcgaacttttcgtaagcgatcctgaa
cttgaagcagaagtaaaagcagcaagtgaaggtaaaatgaaagcagctatcaaaacagaa
gagaaaaaagcacgtgaagctgctattgaagaagtaaaagaagaaattttagaaagctat
aaagcaaaagaattagaaaatgaagcagaaattcttggtgaagtagctcatattcttgaa
atgattgaaaaagacgaaatgcgtcgtttaatttctcaagataaaatccgtccagatggt
cgtaaagtaaacgaaattcgtccactttcttctgaagttggtatgcttcctcgtgtccat
ggctctggtttattcactcgtggccaaacacaagctctaagtgtatgtacactggcaccg
cttcgtgaacaccaaatcattgatggtttagggacagaagaatacaaacgttttatgcat
cattataacttcccacaatttagtgttggggaaacaggtcctcgtcgtgctccaggccgt
cgtgaaatcggtcatggtgcgttaggtgaacgtgcgttacaatatgttattccttccgaa
gaggaattcccgtacacaatccgtctagtatcagaagtgcttgaatcaaacggatctagt
tctcaagcaagtatttgtggttctacacttgcaatgcttgatgctggtgttccaattaaa
gcgccagttgcaggtatcgcaatgggtcttgtaaaacttggcgatgattacacaattctt
tctgatatccaaggtatggaagatcactttggcgatatggactttaaagttgctggaaca
aaagatggtatcacagcacttcaaatggacatcaaaattgatggcttaagccgccaaatt
ttggacgaagcactaacacaagcaaaagaagggcgcctacacattctagaacacttaact
agcactattagcgcgccacgtgaagaactttctgcttatgctccaaaaatcattacactt
aacatcaaacctgagaaaatcaaagatgttatcggacctggtggaaaacaaatcaatgca
attattgatgaaactggcgtaaaaattgatatcgaacaagatggtacagtatacattgct
tctcaagatcaagcaatgaaccgtaaagcaattgctatcatcgaagacatcgttcgtgaa
gtagaagtgggagaagtttacactggtaaagttcgtcgtatcgaaaaatttggcgcattt
gttgaattattcaaaggtacagatggcttagttcacatttctgaattagcacatgaacgt
gttggtaaagtagaagatatcctaaaactaggtgatgaagttactgttaaagttatcgaa
gtagaccaacaaggtcgcgttaacttatcacgtaaagctttgcttgagaaaaaagaacaa
ccagaaggcgataaaaaaccacaagcagagaaaaaattctatcctaaaacgaaaaaacca
gaatctaaataa
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