Listeria monocytogenes HCC23 (serotype 4a): LMHCC_1301
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Entry
LMHCC_1301 CDS
T00801
Symbol
topA
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
lmh
Listeria monocytogenes HCC23 (serotype 4a)
Brite
KEGG Orthology (KO) [BR:
lmh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lmh03032
]
LMHCC_1301 (topA)
03400 DNA repair and recombination proteins [BR:
lmh03400
]
LMHCC_1301 (topA)
Enzymes [BR:
lmh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
LMHCC_1301 (topA)
DNA replication proteins [BR:
lmh03032
]
Prokaryotic type
DNA Topoisomerases
LMHCC_1301 (topA)
DNA repair and recombination proteins [BR:
lmh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
LMHCC_1301 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Toprim_4
DUF2996
JHBP
Toprim_2
Lar_restr_allev
Toprim_3
HypA
Motif
Other DBs
NCBI-ProteinID:
ACK39646
LinkDB
All DBs
Position
complement(1344824..1346902)
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AA seq
692 aa
AA seq
DB search
MADYLVIVESPAKAKTIEKYLGKKFKVKASMGHVRDLPKSQMGVDTEHDYEPRYITIRGK
GPVLKELKQAAKKAKKVYLAADPDREGEAIAWHLANSLELDQSDKLRVVFNEITKEAVKE
SFKTPRKIDMDLVNAQQARRILDRLVGYNISPILWKKVKKGLSAGRVQSIALRIIIDREK
EINNFKPEEYWTIDGNFLKGKKKFQANFYGVNGKKKKLSTADDVKEVMSAIKGKSFDVTD
VTKKERLRNPAAPFTTSSLQQEAARKLNYRTRKTMMLAQQLYEGITLGKQGTVGLITYMR
TDSTRIADSAILEASNYIKETYGPEFSRNHKRSDKNAKGAQDAHEAIRPTSAMRSPQEVK
EYLTRDQLRLYRLIWERFIASQMTPAVLDTMRVDLDNNGVNFRANGSKIKFHGFMKVYVE
SNDDNTEEKENILPDLKKGDKVQSESLEQRQHFTQPPPRYTEARLVKTLEEIGIGRPSTY
SPTLDTIQRRNYVSLTNKRFIPTELGEIVNEMIEDYFPEILDVKFTANMESELDEVEHGE
VEWVKVIDEFYKRFEPNVIKADAEMEKIEIKDEPAGIDCDLCGAPMVYKMGKYGKFLACS
RFPDCRNTKAIVKEIGVTCPKCEKGHVIERKSKKKRIFYGCDRYPDCDYVSWDKPVERAC
PKCEKRALVEKKLKKGVQVQCTNCDYKESTQQ
NT seq
2079 nt
NT seq
+upstream
nt +downstream
nt
atggcagattatttagtgattgtagagtcacctgcaaaagcaaaaacaattgaaaagtat
ttaggtaagaaatttaaagtgaaagcctcaatgggacatgttcgtgacttacctaagagt
caaatgggtgtagacacagagcatgactatgaacctcgttatattacgattcgcggaaaa
ggccctgttttaaaagaattaaaacaagcagccaaaaaagcgaaaaaagtctatctcgcg
gccgatccagaccgcgaaggagaagcaattgcatggcacttagccaatagtttagagtta
gatcaatcagacaaactacgtgtagtatttaacgaaataacgaaggaagcagtaaaagaa
tctttcaaaacaccacgtaaaattgacatggatttagtcaatgcgcaacaagcacgcaga
attttggaccgtttagttggatataatatcagtcctattctatggaaaaaagtgaagaaa
ggtttgagtgcggggcgtgttcagtctatcgcacttcgaattattattgatagagaaaaa
gaaatcaataatttcaaacctgaagaatactggacaattgacggtaacttccttaaaggg
aagaaaaaattccaagccaatttttatggtgtaaatggtaaaaagaaaaagctttccact
gcagatgatgtaaaagaagtaatgtctgcaatcaaagggaaatcatttgacgtaacagat
gtaacgaaaaaagaaagacttagaaatccagctgcaccatttacgacttcaagtttgcaa
caagaagcagctcgaaaactaaattatcgtacaagaaaaacaatgatgcttgcccaacaa
ttatatgaaggaattacacttggtaaacaagggacagtcggcttaattacgtatatgcgt
acagactccactcgtattgctgattccgctatacttgaagcaagcaattacattaaagaa
acttatggacctgaattttctcgtaatcataaacgttcagataaaaatgctaaaggtgct
caagatgcccatgaagcaatcagacctacaagtgcaatgagaagtcctcaagaagtaaaa
gaatatttaacacgggaccaacttcgcctatatcgtttgatttgggaaagatttattgcg
agccaaatgacgccagcagttctagatacaatgcgtgttgacttagataacaacggcgtg
aacttcagagcaaatggctctaaaattaaatttcacggcttcatgaaagtctatgtagaa
agtaacgatgataatacggaagaaaaagaaaatatcttaccagatttgaaaaaaggagat
aaggtacagtccgaatcgctcgaacagcgtcaacatttcacgcagccacctccacgttac
acagaagctagattagtaaaaacgctcgaagaaattggtattggtcgaccatcgacttat
tcgccgacactcgacacaattcagcgcagaaattatgtttctttaacgaataaacgcttt
attccaactgaattaggcgaaatcgttaatgaaatgattgaagactatttcccagaaatt
ttagatgtgaaattcactgccaacatggaaagtgagctcgatgaagtagagcacggagaa
gttgaatgggtgaaagtcattgatgaattttataaacgatttgaaccaaatgtaataaaa
gcagatgcagaaatggaaaaaatcgagattaaagatgaaccagctggtattgactgtgat
ctttgtggagctccaatggtatacaaaatgggtaaatacggtaagttcctagcttgtagc
agatttcctgattgtcgtaatacgaaagcaatcgtgaaagaaatcggtgttacgtgtcct
aaatgtgagaaaggacatgtaatagaaagaaaaagtaagaaaaaacgtattttctacggt
tgtgatcgttatccagattgtgactatgtatcatgggataaaccagtcgaacgggcttgt
ccgaaatgtgagaaacgagcactagtcgagaagaaattgaaaaaaggtgtacaagtacaa
tgtacaaattgtgattacaaagaatcaacccaacaataa
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