Leishmania mexicana: LMXM_08_0080
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Entry
LMXM_08_0080 CDS
T02288
Name
(RefSeq) putative ATP-dependent DEAD/H RNA helicase
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
lmi
Leishmania mexicana
Pathway
lmi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lmi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
LMXM_08_0080
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lmi03041
]
LMXM_08_0080
Enzymes [BR:
lmi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LMXM_08_0080
Spliceosome [BR:
lmi03041
]
Complex A
U2 snRNP components
U2 related factors
LMXM_08_0080
Complex B
LMXM_08_0080
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
KH_12
ResIII
AAA_22
Cas3-like_C_2
SecA_DEAD
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-GeneID:
13447209
NCBI-ProteinID:
XP_003872570
UniProt:
E9AM86
LinkDB
All DBs
Position
8:1177310..1179367
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AA seq
685 aa
AA seq
DB search
MNYAPIRTDFYVVPPDMTNLTAEEMRGLLRELDGAKVHGQDVPRPIRSWHGTGLPDRVLE
VLEEHEYKCPFAVQSLGVPALMSGRDLLLTAKTGSGKTLCYALPLIRHCADQPRCEKSEG
PIGLVLVPTQELAMQVFTLLDELGEAAGLRCVASYGSTSLSDNIRHVKAGCELMVATPGR
LLDLLTVNGGKALSLSRVSFVIVDEADRLFDSGFMEHVEAFLKNIRPDRVTGMISATMPK
ELRGVVAQHLRNPVLISVGGKPTPASNVEQQFFFFDEEVYDANNIKADMSPRLVKLLALL
GDEGGDGQNLILVFTQRKEEVDELLGRLTTLGYANRVATLYSGMDPIDREFALEHFAPGK
QFILVATAVAERGLDIPYLGLVINYRLPNHYEAYVHRIGRTGRAGRSGRAVSFFTRGKDD
DIAPELVEGLERAEQRVPEELYEVAEKVRALRKSGDARYNSGFFRGYRDAKAQRFTDRNK
KEKVREAARAAGLEQFLSSSSESDSDASSDEDTNITAVPVQSRARAASAEEAAANAMALT
LHRGAQRSALTLSTAQEDRISKALAFAQKTTTAATIGADEATMVRFQSEYPINDLPDAVR
GKLQSGAFMRSIAEETETSLIRKGVYFDPRYKHSRRMKEGEKPLYFLIVGKSMEAVRAAR
NKLDEVKAELLSKQKKTGSVTGATI
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
atgaactacgcccccatccgcacagacttctacgtggtgccgccggacatgacgaacctc
acagcagaggagatgcgaggactgctgcgggagctggatggggcaaaggttcacgggcag
gatgtgccgcggccgattcgctcctggcatggcaccggactgccggatcgcgtgctggag
gtgctggaggagcacgagtacaagtgcccttttgcggtgcagtcgctcggcgtgccggcg
ctgatgagcggacgggatttgctcctcacagcaaagacgggatccggcaaaacgctctgc
tacgcgctgccgctcatccggcactgcgcggaccagccgcggtgtgaaaagagcgagggc
ccgatagggctggtgcttgttcccacgcaggagctcgctatgcaggtattcacgcttctc
gacgagttgggggaggctgctgggctacgctgcgtcgcctcgtacggcagcacgtcgcta
tccgacaatattcgtcacgtcaaggcggggtgtgagctgatggtggcgacgcccggtcgg
ctactagacctcctgacagtgaacggcgggaaggcgttgagcctgtcgcgcgtctccttc
gtcatcgttgacgaggcggaccgcctcttcgacagcggcttcatggaacacgtggaggcc
tttctgaagaacatacgccctgaccgcgtaactgggatgatcagcgctacgatgccaaag
gagctgcgcggggtagtagcgcaacacctgcggaaccctgttctcatttctgtcggtgga
aaaccaacgcctgcctcgaacgtcgagcagcagtttttctttttcgacgaggaggtgtac
gacgcgaacaacatcaaggcagacatgagcccacgtctggtaaagctactggcattgctg
ggcgatgagggcggtgacggccagaacctaatcctggtctttactcaacggaaggaagag
gtggacgagttgttggggcggctcacgacgctaggctacgccaaccgcgtggcgacactc
tacagcggcatggaccccatcgaccgcgagtttgcgctggagcactttgccccagggaag
cagtttattcttgtcgccaccgcagttgcagagcgcggcttggatataccgtacctcggc
ctcgttatcaactaccgcctgcccaaccactacgaggcgtacgtgcatcggattggccgc
accggccgcgccgggcgcagtgggcgtgccgtgagctttttcactcgtggcaaggatgac
gacatcgctccggagctggtggaagggcttgagcgcgcagagcagcgagtgccagaggag
ttgtacgaggttgcggagaaggtgcgtgcgctgcgcaagtctggcgatgcacggtacaac
agcggcttctttcgcggctaccgcgacgcgaaggcgcagcgcttcactgaccgcaacaag
aaggagaaggtgcgcgaggcagcccgcgcggccgggttagagcagtttctcagctcctcc
tcggagtccgactcggatgcctcgagcgacgaagacacaaacatcactgcggtgccggtg
caatcgagagcccgcgctgcgtcggcggaggaggcagcggcgaacgcgatggcgctgaca
ctgcaccgtggtgcgcaacgcagcgcgttgaccctgtccactgcgcaggaggaccgcatt
tccaaggctctggcatttgcgcagaaaacaaccacggcggccacgataggggcggacgag
gcgacgatggtgcgttttcagagcgagtaccccattaatgacttgcccgatgccgtgcgt
ggcaagctgcagagcggggcttttatgcgctccatcgcggaggagacggagacatcattg
atccgaaagggcgtgtacttcgacccacgctacaagcactcgcggcggatgaaggagggg
gagaagccgctgtatttcttgatagtgggcaagtcgatggaggcggtgcgggcagctcgc
aacaaactcgacgaggtgaaggcagagctgctgagcaaacagaagaagacgggatccgtg
actggtgccacgatctag
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