Leishmania mexicana: LMXM_14_0010
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Entry
LMXM_14_0010 CDS
T02288
Name
(RefSeq) putative exosome complex exonuclease
KO
K03679
exosome complex component RRP4
Organism
lmi
Leishmania mexicana
Pathway
lmi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lmi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LMXM_14_0010
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lmi03019
]
LMXM_14_0010
Messenger RNA biogenesis [BR:
lmi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
LMXM_14_0010
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
LMXM_14_0010
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRP4_S1
KH_6
RRP40_S1
YlbD_coat
Gp10A-like
Motif
Other DBs
NCBI-GeneID:
13449551
NCBI-ProteinID:
XP_003873372
UniProt:
E9APJ5
LinkDB
All DBs
Position
14:2321..3244
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AA seq
307 aa
AA seq
DB search
MSSSVVIVGDSICGGEADQKLSTSSEEVYLRGFNTFAGNNPSDLALFHEGAGEIVAAISG
HIEVTDRVISVKGLLPRYQPEIGDVVVGRILEVTGNKWQVDVNSTQTAIMLLSSVTEPGG
ILRRRGRGDELGMRQIFDQDDLVAAEVQRISPDGVMSLHTRAAEKYGRLSGLGILVSVRP
SLVKRAKHQFVELADYSTQLIIGMNGNIWISSMQPSASDAEETEHAADARQNVARVANCI
KTMGAAQVQIHPASIEASVAASLEAGLSAFEVSLERHRDALLARVADMVGIQHRRPTGSG
ASAGMLV
NT seq
924 nt
NT seq
+upstream
nt +downstream
nt
atgtcatccagcgttgtgattgtgggtgactccatctgtggaggggaagcagatcagaag
ctgagcacaagctccgaagaagtgtatcttcgcggatttaacacttttgcagggaataac
cccagtgacctggctctgttccacgaaggggctggcgaaattgtggctgccatcagtggg
cacatagaggtaaccgatcgcgtgatttcggtgaaggggctgctaccgcggtaccagcca
gaaattggggatgttgtagtggggcggatcttggaagtgacaggaaacaagtggcaagtt
gatgtgaactccactcaaacggcaattatgctgctttcaagcgtaacggagcctggaggc
atactgcggcgacgaggccgcggtgacgagctcgggatgcgccagatcttcgaccaagat
gatctggttgcggcagaggttcaacgcatctctccggatggtgtgatgtcactgcacacg
cgtgcagcggagaagtatggtcgactgtcaggactgggcattttggtgagtgtgcgtccc
tcgttggtgaaacgcgcgaagcaccagtttgtagaacttgccgactacagcacgcaactg
atcatcggcatgaatggtaacatatggatttcctcgatgcaaccctctgctagcgacgcg
gaggagacggagcacgccgctgacgcacgtcaaaacgtggcgcgtgttgcaaactgcatc
aaaactatgggtgcggcgcaagttcagattcacccagcatcgatagaggccagtgtcgcg
gcgtcattggaggcaggcttgtcggcgtttgaagtctcgcttgaaaggcacagggatgcg
cttttggcacgcgttgctgacatggtaggaattcaacaccgccgccccactggcagcggc
gcttccgcgggaatgctggtgtag
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