Leishmania mexicana: LMXM_21_0800
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Entry
LMXM_21_0800 CDS
T02288
Name
(RefSeq) hypothetical protein
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
lmi
Leishmania mexicana
Pathway
lmi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lmi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LMXM_21_0800
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lmi03019
]
LMXM_21_0800
Messenger RNA biogenesis [BR:
lmi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
LMXM_21_0800
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
LMXM_21_0800
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
DUF3819
ARM_Cnot1
NOT1_connector
DUF2785
Motif
Other DBs
NCBI-GeneID:
13453983
NCBI-ProteinID:
XP_003875321
UniProt:
E9AV48
LinkDB
All DBs
Position
21:243757..250518
Genome browser
AA seq
2253 aa
AA seq
DB search
MLYDRVNDIGSSQGEAIRYILGAVSKNTVQTTLTTLEQFCFRSVELHRYTIKATCTALLA
ARSDERGLLASRLVSEALGRPNGLTLVACALDGCSSTLTKESLTALMTNDLKLSPMKQMQ
MAMALVLGGNAMVKSAATDILEDFNVPQAALKEDDGGVRAAALLSRQVGLAPENLDGQLA
NVCHTVALPKPKTEVKPRVSVAGVLRELGTGCVTTLADSRELLSIFPHSFTERDGAEVLA
FFASAGSAVNDSSTYASLMMASGKSSPKNMSGTTTLVNAMPLLDALCEGSPKGFNWDLVI
RMLDQPDGEPFRVKHISVIFDAYHRFQPDNEFPSVALFLGRWTNTLRQRSVLEYILRHPD
KVNRKPLAIDAPSEVLPATKPPGVTTAEMDLWRSTAFMEAAVHVASREKDFDNDVFRPAA
EKLPLLFLYSLFTGNFQGTVKHFTFMKHLLKAHCPSLDLVSQHIVPEMERRGRLSTVIGV
LSDLTETAPERLVDVLQVVFKCKSAAKRVLDESGSPRLVTAVAMCMEEAGESSDKWLQRA
LEGKLHFRASSTENRFAVAMNIIEVAEMLLEKQLYTVSATAALNALLASPLKEVLRSVTD
CAKVLLASTDSLFPDDVENEALEFFKKMYAAGSTAAAIATVESLLKSTVPRDKQLYACIV
GIMFDETSAISCYPRKELQLFAELYGQMISKDLLPPNQQQRAWGVLLPAVAKPGNYAMEE
YGIIALEQVKPRLPDWPQYGRALRYVRDLDFRVPGIVAAINRGIKQEDAAARGGAATSAE
LGEGSPTSPTSPRQPGSPNKALAAIDPAIVSAASSQSKKFTDMAAAKLHTLDIGTLVTNA
NVTAPPRVIQEQINFLIGNTDVRNLESNATELSQLLRPEYYEYFADYLVVKRAALEPNYH
SMYIELIAKLHSKDMERALRKATIGAVHRLLSSQKIGTDSSERILLRNLGSWLGSITLEK
NIPILQQDLHFKSLLCQGIREGKLVPVVSFITRVLTSCAKSRFFCPPNPWTMAQLVLLME
MYTLPHLRVTLRFELELLLKSLDQSMQDLAQYMRAHASHASTETRLRDVYDEININESPD
FRVGEDESNVSAAAVAAQPAPATASPPMQQSQRSSARPLQASAEPFQPKDKAQAPPSEVS
RVMQMLNKPIRPPIGISLNWVFSTLSDPAFGNNAQRLTDHRLEIVAQLQAVVDEAVSYCM
QRSVAIAARTTERLVLKDYARDPFPDDMLVAGDAMARSLASSLSYVMVRDELPLLLHRSM
TNLLERILAPYTPLEHKATIRDTLVARNLELCMRAVEYSVGEEAATATSRFLFDVAREKA
SAFAEQEPLPLPPDQIEAAELLRVMGEALVPSGRMPAPQRDVYDDFYSCVPPVAVFNMVL
RSVEEAVSRYHSNENAPPLDFSQLDAASQKPSGLTDDAQAPIRLHLGRLMSLITEESSPY
FLSPMLNKLMSLAVSTERLTKLVNSSAKNAQAGAATAAAAAAVTNPDGTPNAAEDPAWQQ
EALRISAALHQLYLRIVLRCRECGEETNRDELTRLFLRHSHCYSFSKLTTDLIRIKVLKC
SEFDEALAKALTNGTSNYVTFAGDIITDVIIKEKLVASKDMRRTLMALDTIARTRAPRAA
PAAPAQTLPSYVTEPPLSKIVPSQITKLLVPCDCVRPGEDEAFQKEVGHLMNDWITVWSQ
KSHRYAEKRIPSVVFVKTLQQRRMLDTAHLQTFLSLGVRYCVEYYANTMLAMERADGNIT
SETLVGTRPGGPPGYRTPYTAKPFVMCDGFVELVMVLLQCCSLRNEASHDLRAETTLLRR
VLDAVTRVLTEHHNFVAKARPAPAWTLAADEQFVPLFQQQPYVRLLSNLVYSLHRLEIST
TRAMSTEFTSAFHTFLRRVHPMEYPGFVFGWLEILSHRHIIPRFMNVQSMWPHYVDLLAG
AMMFVKFLTKGNRISPNGLVFYKSLLKLVLVLLHDYPRFLIAQHYPLCEAISLSCVQLLN
TVLCSFPPDKRLPEPFPHVDSNDPAMLQVLDTSVQEACIKVTFTTFNVQPQLLANLEMMV
TNDDAPVSDSVLTDLLNDLTQASAKRSLINAVVQHMAIVYLRTHDNRIPANFAKSNVLAC
YRFLCSRLNTKRRYYMLGACANQLRFPNIQTNFFANVVLNLFLPSPTVDAQTQTCVQEQI
TRVLAEKTVIVQPHPWGVLNTFVELMREPKYKFWETSFIHYAPLDSMFTKLHHTVHTRLS
KAGSGGAAVLDGARADSANAAATTSGIGATPSA
NT seq
6762 nt
NT seq
+upstream
nt +downstream
nt
atgttgtatgatcgcgtgaacgacatcgggagctcgcagggggaggcgattcgctacatc
cttggtgccgtctccaagaacaccgtgcagacaacactgacgacgctagagcagttctgc
ttccgctccgttgagctccaccggtacacaatcaaggccacgtgcacggccctgctggca
gcgcggagcgatgagcggggactgctggcatctcggttggtgagcgaggcacttgggcgg
ccgaacgggctgaccctggttgcctgcgccctcgacggctgctcctcgaccctgacgaag
gagtccctcactgcactgatgacgaacgacctcaagttgtctcccatgaagcagatgcag
atggctatggcactcgtgcttggcggaaacgcgatggtcaagtcggcagcgacggatata
ctggaggacttcaacgtgccgcaggcggccctgaaggaggacgatgggggcgtgcgtgcg
gcggcgcttctgtcacggcaggtaggccttgcccccgaaaacctggacggtcagctggca
aacgtgtgccacacggtcgcgttgccgaagccgaagacggaggtgaagccgcgcgtgagc
gtggcgggcgtcctgcgcgagctaggaacggggtgtgtgacgacgctggcggactcgcgc
gagctgctcagcatttttccgcactccttcacagagcgcgacggcgccgaggtgctcgcc
ttcttcgcttccgcggggtcggccgtcaacgacagcagcacgtacgcgtccctcatgatg
gcgtcagggaagagctcgccaaagaacatgagcggcacgacgacgctcgtgaacgcgatg
ccgctactcgacgcgctttgtgaggggagcccgaagggcttcaactgggaccttgtcatc
cggatgcttgaccagccggatggcgagccgttccgcgtgaagcacatctcggtcatcttt
gacgcctaccaccgcttccagccggacaacgagttcccgtctgtggcgttgtttctcggc
aggtggacgaacacgctgcgccagcgcagcgtgctcgaatatatcttgcgccaccccgac
aaggtcaatcgcaagccgctcgcgatagacgccccgtcggaggtgttgccagcgacgaag
ccgcccggcgtgacgacagccgagatggacttatggcgctctacggcgttcatggaggct
gccgtgcacgtggcgagtcgcgaaaaggacttcgataacgacgtgttccgccccgccgcg
gagaagctgccgctgcttttcttgtacagcctcttcacgggcaacttccagggcacggtt
aagcacttcacgttcatgaagcatctgctcaaggctcattgcccctccctggacctcgtg
tcgcagcacattgtgcccgagatggagaggcggggccgactcagcaccgtgatcggcgtg
ctctcagacctgacggagaccgctccagagcgtcttgtggatgtgctgcaggtggtgttc
aagtgcaagtctgccgcgaagcgcgtactcgacgagagcgggagccctcgcctcgtcacg
gctgtcgccatgtgcatggaggaggcaggtgagtcgagtgacaagtggctccagcgcgcg
ctggagggcaagctgcacttccgcgccagctccacggagaaccgcttcgccgtggccatg
aacatcatcgaggtggctgagatgctcctggaaaagcagctctacacggtgagcgcgacg
gcggctctcaacgccctgcttgcctccccgctgaaggaggtgctgaggagcgtgacggac
tgcgccaaggtgctgctcgcctcgacggactctctcttccccgacgacgtcgagaacgaa
gcactggagttcttcaaaaagatgtacgccgctggcagcaccgcggctgccattgccact
gtcgagagcctgctgaagagtacagtgccacgcgacaagcagctctatgcgtgcatcgtg
ggtatcatgttcgacgagacgtccgccataagctgctacccacgcaaggagctgcagctg
ttcgccgagttgtacggccagatgatctcgaaagatctgctgccaccgaaccagcagcag
cgagcgtggggtgtcctgctcccagccgtcgcgaagcccggcaactacgcgatggaggaa
tacggtattatcgcgctcgagcaggtgaaaccgcgactgccggactggccgcagtacggt
cgcgctctgcgctacgtgcgggacttggatttccgcgttcccggcatcgtcgccgccatc
aaccgcgggatcaagcaggaggacgccgctgcgcgtggcggcgcagcgacgtcggcggag
ctcggtgagggaagcccaacctcgccaacgtccccgaggcagcctggctcgccgaacaag
gcgctcgctgccatcgaccccgccattgtgtcggcggcgtcatcgcagtcgaagaagttc
acggacatggcggcggcgaagctgcacacgctggacatcggtaccctcgtgacgaacgcg
aacgtgacggccccgccgcgcgtgattcaggagcagatcaacttcctgattggcaacacc
gacgtgcgcaacctagagagcaacgcgacagagctgtcacagttgctgcggccggagtac
tacgagtactttgcggactatctggtggtgaagcgtgccgcgctggaacccaactaccac
tctatgtacattgagctgattgcgaagctgcactcaaaggacatggagcgcgcactgcgc
aaggccactatcggtgctgtgcaccgtctgctgagctcacagaagatcggcaccgactcg
agcgagcgtattctactgcgcaaccttggctcctggctcgggagcatcacgctggagaag
aacatccccatcttgcagcaggacctgcacttcaagtcgctcctttgccagggcattcgc
gagggaaagctggtcccggttgtctcgttcattacgcgcgttctgacaagctgcgccaag
tcgcgcttcttctgcccaccaaacccgtggacgatggcgcagctggtgctgctgatggag
atgtacacgctgccccacctgcgcgtgacactgcgcttcgagctggagctgctgctgaag
tcgctggaccagtcgatgcaggacttggcgcagtacatgcgggcgcatgcttcccacgcc
tccaccgagacacgcctgcgcgacgtgtacgatgagatcaacatcaacgaaagccctgac
ttccgcgtcggtgaggatgagagcaacgtgtctgcggctgccgtcgcagcgcagccggcg
ccggctaccgcatcaccgccgatgcagcagtcgcagcgcagcagcgctcgcccactgcaa
gccagcgcagagccgttccagcccaaggacaaggcgcaggccccgccgtccgaggtgagc
cgtgttatgcagatgctgaacaagccaatccgccctccgattggtatctcactgaactgg
gtgttttccacgcttagcgatcccgccttcggcaacaacgcccagcgtctcactgatcat
cggctcgagattgttgcacagctgcaggccgtggtcgacgaggccgtgagctactgcatg
cagcgcagtgttgctatcgccgcccgcacgacggagaggctggtgctgaaggactatgcg
cgcgacccgttccccgatgacatgctcgtcgctggcgatgccatggcccgctcactggca
tctagcttgagctacgtgatggtgcgcgatgagctgccgctgctcctgcaccgctcgatg
acgaacctgctggagcgcattctggccccctacacaccgctggagcacaaggcaacaatc
cgcgacaccctggtggcacgtaacctggagctgtgcatgcgtgcagtggagtacagcgtc
ggtgaggaggcggcgacggctacgagccgattcctattcgacgtcgcgcgcgagaaggcc
agcgcctttgcggagcaggaacctctgccactgccgccagaccagatcgaggccgccgag
ctgctgcgcgtcatgggtgaggcgctcgtgccgtctggccggatgccggccccgcagcgg
gatgtctacgatgacttctacagctgcgtaccgcctgtggccgtgttcaacatggtgctg
cgcagcgtcgaggaggcggtgtcgcggtaccattcgaacgagaacgccccgccgctggac
ttttcgcagcttgacgccgccagccagaagccgagcgggctgactgatgacgcgcaggcc
cccatccgcctgcacctgggccgtctcatgagcctcatcacggaggagtcgagcccctac
ttcctcagccctatgctgaacaagctcatgtccctcgccgtatcgacggagcggctgacc
aagctggtcaacagcagcgccaagaacgcgcaggccggtgctgctaccgccgccgctgcc
gccgctgtcaccaaccccgacggcaccccgaacgcggcagaggacccggcatggcagcag
gaggcgctgcgcatctccgcagcgctgcatcagctgtacctgcgcattgtgctgcggtgc
cgcgagtgtggcgaggagacgaaccgcgacgagctcacgcggctgttcctgcgccacagc
cactgctactccttctcgaaactgacgacagacctcatccgcatcaaggtcctgaagtgc
agcgagttcgatgaggccttggcgaaggcgctgaccaacggcacgtccaactacgtcacc
tttgcgggtgacatcattaccgacgtcatcatcaaggagaagctcgtggcgtcgaaggac
atgcgccgcacgctcatggccctcgacacgattgcgcggacgcgagcgccgcgcgccgcg
ccggcggcgccggcacagacgcttccgtcgtacgtcacggagccgcctttgagcaagatc
gtgccgagccagattacaaagctcctcgtcccgtgcgactgcgtccgccctggcgaggac
gaggccttccagaaggaggtgggacatctcatgaatgattggatcacggtgtggtcgcag
aagagccaccgctacgccgagaagcgcatcccgtccgtcgtattcgtgaagacgctgcag
cagcgccgcatgctggacacggctcacctgcagaccttcctgagtctgggcgtccgctat
tgtgtggagtactacgccaacacaatgcttgcgatggagcgcgcagacggcaacatcacg
agcgagacgttggtgggcacgcggcctggagggccgccaggctaccgaactccgtacacc
gcaaaacccttcgtcatgtgcgacggctttgtggagctggtcatggtgctgctgcagtgc
tgctcgctgcgcaacgaagcctcgcacgacttgcgagccgagaccacgctcctacgccgc
gtgctggatgctgtgacgcgcgtgttgacggagcaccacaactttgttgccaaggctcgc
cctgcccccgcgtggacgctcgcggccgatgagcagttcgtcccgctctttcagcagcag
ccgtatgtgcgcttgcttagcaacctcgtatactcgcttcaccggctggagatctcgacg
acgcgcgccatgtcgacggagttcacgagtgccttccacacgtttttgcgccgcgtgcac
cccatggagtacccgggctttgtttttggctggctggagatcctgtcgcaccggcacatc
atcccgcgctttatgaacgtgcagtcgatgtggccccactacgtcgacctcctcgccggt
gccatgatgtttgtgaagttcttgaccaaaggcaaccgcatttccccgaacggcctcgtc
ttctacaagtcgctgctgaagcttgtgctggtgctcttgcacgactacccgcggttcctg
atcgcacagcactacccgctctgcgaggccatttcgctctcgtgcgtgcagctgctgaac
acggtgctgtgctccttcccacctgacaagcgcctgccggagccgttccctcacgtcgac
tccaacgatccagcgatgctgcaggtgctcgacacatccgtgcaggaggcatgcatcaag
gtcaccttcaccaccttcaatgtgcagccgcagctcctggcgaatcttgagatgatggtc
acgaacgatgatgctccagtcagcgacagtgttctgacagaccttctgaacgacctgacg
caggcatcggccaagcgcagcctcatcaacgccgtggtgcagcacatggccatcgtgtat
ctgcgcacccacgacaaccgcatccccgcgaactttgcgaagtcgaacgtactcgcgtgc
taccgcttcttgtgcagccgcctcaacacgaagcgtcgctattacatgctcggcgcctgc
gccaaccagctacgttttccgaacattcagacgaacttcttcgcgaatgtggtgctgaac
ctgtttctgccgtcgccgacggtggacgcgcagactcagacctgtgtgcaggagcagatc
acgcgcgtgctggcggagaagacggtgattgtgcagccgcatccgtggggcgtgctcaac
acctttgttgagttgatgcgcgagcccaagtacaagttctgggagacctccttcattcac
tacgcccccctcgactccatgttcacgaagctgcaccacacagtgcacacgcggttgagc
aaggctggcagtggcggtgccgctgttctcgacggcgcccgagccgattcggccaatgcc
gcggcgaccacctccggcatcggtgccacgccttctgcgtag
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integrated database retrieval system
