Leishmania mexicana: LMXM_23_0543
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Entry
LMXM_23_0543 CDS
T02288
Name
(RefSeq) putative 5'-3' exonuclease XRNC
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
lmi
Leishmania mexicana
Pathway
lmi03008
Ribosome biogenesis in eukaryotes
lmi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lmi00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
LMXM_23_0543
09123 Folding, sorting and degradation
03018 RNA degradation
LMXM_23_0543
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lmi03021
]
LMXM_23_0543
03019 Messenger RNA biogenesis [BR:
lmi03019
]
LMXM_23_0543
03009 Ribosome biogenesis [BR:
lmi03009
]
LMXM_23_0543
03016 Transfer RNA biogenesis [BR:
lmi03016
]
LMXM_23_0543
Transcription machinery [BR:
lmi03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
LMXM_23_0543
Messenger RNA biogenesis [BR:
lmi03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
LMXM_23_0543
Ribosome biogenesis [BR:
lmi03009
]
Eukaryotic type
Pre-60S particles
RNases
LMXM_23_0543
Transfer RNA biogenesis [BR:
lmi03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
LMXM_23_0543
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_N
XRN_M
Motif
Other DBs
NCBI-GeneID:
13454357
NCBI-ProteinID:
XP_003875681
UniProt:
E9AW59
LinkDB
All DBs
Position
23:194999..198211
Genome browser
AA seq
1070 aa
AA seq
DB search
MGVPLLLTWLRKRFADCFMPADSAVTDYIRRSTDNLFIDLNSFLYQAATIITATHRTHRF
HSVDEVEDVVLRKLFDLLDDLVMNLVQPKALVYIAVDGVSPLGKMSQQRARRRRGARRQS
SASPSSSFRHHEPAGNINDLWDSNCISVGTRFMAKVTEALHFYAVSRTERINAKRLREER
VRIDKADASVDSAAGDSTGESYVFPFISIIVDDVLRPGEGENKIAEFIRRIRADPSYGPN
TSHVICSSDTDVTVTSLILHEPRIHVLRYEPPVSLGGKLPMKPQPPAQHHHQHRSHHQHV
RFSSHPHRGSCPSSHGPRRVDGRSGHAHHSPPRPSSGHGDGAAAQPPPPKDSWLSTFFSI
HVFRQRLREILHLSPGNDAASAVEGAAVSLVDAEEAALTFEHALHDVVFVLLLFGNDFLP
TIGGSIQEGTLDALLALLATDFVPRGRTLVDPATNRIQYASARYLLSCLAELPGNAKKGG
SGGRLQVHNGGSDALDWGFTAEKEAKERDPAFIERQQRREKQHERMCYCYWTMLQWALQY
SAGIVEHWGCYYPYGRAPPLSKLATYCGVLTYNALGEIARRRLEMSAAAGRVTSSIDGEV
ENATEEEDDDDGMDGLPTSALQAGETGTAVIDAAERGKPTDVMVQLLILIPPRSVALLPT
VFRHHYKEVEAAVQAPVEQLNLVSIGAWCEEKKRSLSEEERTRFTAYQFFASDADLGTAE
APFPARDIAFTAYWNGPAVQAELAALRVSKKATSATPGTTFTASATSSTAAAGLQSKAAS
FFSMGRRPTSGTSSNGGAAALLAAVNINNTRTSPPPAPATAEIATPLEETPASPSTEVTP
ALQQQNQPVKLRHPAGDYVLWVVPCDALQDALMVKALGTMHGNRFCVGSYVPLVEQDAVL
SRSGGPRQEVRLQFRLVVAPVITDTTYAARLLSGYEEPAEVGMRERIAEARKEEADQADP
WKQLDKMQTLQQERKRARDVENEHASGEGELDGDLAHAAPLSAGDDGQVPQEVELQEQRQ
QPQPQQVTLDTVDSTVQVADAEALLKLRKEEVRRRLTALKAARQAAQQDE
NT seq
3213 nt
NT seq
+upstream
nt +downstream
nt
atgggcgtaccgctgctcctgacctggctgcggaagcgctttgccgactgcttcatgcca
gccgacagcgcggtcaccgactacatccgcagaagcaccgacaacctttttattgatctc
aactccttcttgtaccaggccgccaccatcattacggcaacgcaccgcacgcaccgcttc
cactcggttgatgaggtggaggatgtagtgctgcgcaagctgtttgacctcctcgacgac
ctcgtcatgaacctcgtccagcccaaggcactggtgtacatcgcggtagatggggtgtct
ccactgggcaagatgtcgcagcagcgtgcgcggcggcgtcgtggagcccgccggcagtcg
tccgcctcgccatcttcgtctttccgccatcacgagccggcgggcaacatcaacgacctg
tgggacagcaactgcatcagcgtcgggacgcgcttcatggccaaggtgacggaggcgctg
cacttttacgccgtcagcaggacagaacggatcaacgcgaagcgacttcgcgaagagcgg
gtccgcattgacaaggccgacgcatcagtggactctgccgccggcgactccaccggcgag
tcgtacgtgttccccttcatcagcatcattgtcgacgatgtgctgcggcccggcgagggc
gagaacaagatcgctgagttcatccgccgcatccgcgctgatccgagctacggcccgaac
acgtcgcacgtcatctgcagctccgacacggacgtcaccgtaaccagcctaatcctgcac
gagccacgtatccatgtcctgcgctacgagccgccggtctcgctgggaggtaagctgccc
atgaagcctcagccaccggctcagcatcaccatcagcaccgcagccaccaccagcacgtg
cgtttctcctctcatccacatcgcggcagttgtccgtcgtcgcacgggccgcgccgggtc
gacggacggagcggccatgctcatcacagcccaccacgcccctcttcgggccacggcgac
ggtgccgctgcgcaaccaccgcccccgaaagacagctggctctccaccttctttagcatt
cacgtctttcggcagcggctgcgcgaaatccttcacttgtcaccaggcaacgacgccgct
tccgccgtcgagggcgccgccgtgtctctggtggacgccgaggaggccgccctcaccttt
gagcacgccctccacgatgttgtcttcgtgttgctgctcttcggcaacgacttcctgccc
accatcggtggaagcattcaggagggcacgttggacgcgctactcgcgctgctggcgacc
gactttgtgccgcgcgggcgcaccttggtggacccggcgacaaaccgcatccagtatgcg
tccgcccgctacctgcttagttgcctggcggagctgccaggcaacgcgaagaagggcgga
agtggaggccgtctgcaggtgcacaatggcggctccgacgcgctggactggggctttaca
gccgaaaaagaagcgaaggagcgagaccccgcctttatcgagcgacagcagcggcgcgag
aagcagcatgagcgcatgtgttactgctactggacgatgctacagtgggcactgcagtac
agtgccggcattgtggagcactggggctgctactacccgtacggcagggcgccccccttg
tcaaagcttgccacatactgcggtgtgctcacctacaacgcactcggggagattgcgcga
cggcgactggagatgagcgccgccgctgggcgcgtcacgagcagcatcgatggcgaggtc
gaaaacgccaccgaggaggaggacgatgacgacggcatggacgggcttccaacgtcagcg
ctgcaggccggggagactggcacggcggtgatcgatgctgcagagcgcggcaagccgacg
gatgtgatggtgcagcttctgatccttatccctccgcgcagtgtggcgctgctgcccact
gtctttcggcatcactacaaggaagtcgaggcggctgtgcaggcacccgtggagcagctg
aacctagtgtccatcggtgcctggtgcgaggagaagaagcggtcgcttagcgaggaagag
cggacgcgcttcacggcgtaccagttcttcgcctccgacgccgacctcggcaccgccgag
gccccgtttcccgcgcgagacatcgcctttaccgcctattggaacggccctgccgtccag
gccgagttggcggcgctccgggtgagcaagaaggcaacaagtgctacccccggcaccacc
ttcactgccagcgccacgtcgtccacggcggcggcgggactgcagagtaaggccgcctcc
tttttcagcatgggtcgtcggccgacttccggcacctcaagcaatggcggcgcagcagca
ctcttggcagctgtcaacatcaataacactcgtacctcgccgccaccggcgccggccacg
gcggagatcgcgacaccactcgaagagacgcctgcaagcccgtcgactgaagtaaccccg
gcactgcagcagcaaaatcagcccgtaaagctgcggcacccagcaggcgactacgtactc
tgggtggtcccatgcgacgctctgcaagacgcgctgatggtcaaggcgttgggtacgatg
catgggaaccgcttctgcgtgggcagctacgtaccgcttgtggagcaagacgccgtactc
agtcgcagcggtgggccacggcaggaggtgcggctgcagttccgccttgttgtggcccca
gtgatcacggacacaacgtacgcggcgcgcctgctgtcggggtacgaggagccggcggag
gtgggcatgcgcgagcggatcgcggaggcgagaaaagaggaggccgaccaggccgatccg
tggaagcagctggacaagatgcagacgctgcaacaggaacgcaagcgtgcccgcgacgtc
gagaacgaacacgcgtctggtgaaggggaactggacggcgaccttgcgcacgctgcaccg
ctgagcgccggcgatgatgggcaggtgccgcaggaagtagagctgcaggagcagcggcag
cagccgcagccgcaacaggtgacgcttgacactgtggactcgacagtgcaggtggccgat
gcggaagcgcttctgaaacttcgcaaggaagaagtgcggcggcggttaacggccttgaag
gctgctcggcaggccgcacagcaggacgagtga
DBGET
integrated database retrieval system
