Leishmania mexicana: LMXM_28_1530
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Entry
LMXM_28_1530 CDS
T02288
Name
(RefSeq) putative DEAD box RNA helicase
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
lmi
Leishmania mexicana
Pathway
lmi03013
Nucleocytoplasmic transport
lmi03015
mRNA surveillance pathway
lmi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lmi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
LMXM_28_1530
09122 Translation
03013 Nucleocytoplasmic transport
LMXM_28_1530
03015 mRNA surveillance pathway
LMXM_28_1530
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lmi03019
]
LMXM_28_1530
03041 Spliceosome [BR:
lmi03041
]
LMXM_28_1530
03009 Ribosome biogenesis [BR:
lmi03009
]
LMXM_28_1530
03012 Translation factors [BR:
lmi03012
]
LMXM_28_1530
Enzymes [BR:
lmi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LMXM_28_1530
Messenger RNA biogenesis [BR:
lmi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
LMXM_28_1530
mRNA cycle factors
Stress granule specific factors
LMXM_28_1530
Spliceosome [BR:
lmi03041
]
Complex C
Other components
EJC/TREX
LMXM_28_1530
Ribosome biogenesis [BR:
lmi03009
]
Eukaryotic type
90S particles
Helicases
LMXM_28_1530
Translation factors [BR:
lmi03012
]
Eukaryotic type
Initiation factors
eIF-4
LMXM_28_1530
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
AAA_22
TelK_muzzle
Motif
Other DBs
NCBI-GeneID:
13450698
NCBI-ProteinID:
XP_003876995
UniProt:
E9AZX3
LinkDB
All DBs
Position
28:556663..557832
Genome browser
AA seq
389 aa
AA seq
DB search
METEQVDNIQANVLAIPTFEAMGLKEDLLKGMYSFGYKQPTAIQKRFIMPFLKGRDVIAQ
ASSGTGKTSAFCVCLLQACDPHTREAQALILSPTRELAVQTQDLCNNIGHHMGLTAYACI
GGKSTEEDIRRLESGVHIISGTPGRVFDMIRRKSLRVNGLKTLVLDEADEMLGKGFKAQI
HDIYRMVPPLQIILVSATLPADVLEMTEKFMTEPASILVKRDEITVDSVKQYFVSVDEEK
NKFDVLMELYDSLTIAHAVVFCNTRKKVEQLAKKMTREKFAVTAMHGDMPQAERDEIMRQ
FRNGHSRVLITTDLWARGIDVERVSLVLSYDLPLSREQYIHRIGRTGRMGRTGLAITFVR
HDELRLLRDIEQFYATQIEELPANIGEQM
NT seq
1170 nt
NT seq
+upstream
nt +downstream
nt
atggagacggagcaagtggataatattcaggccaacgtgctggccatcccaacctttgag
gcgatggggttgaaagaggacctgctcaagggcatgtacagcttcggctacaagcagccc
accgccattcagaagcgcttcattatgccgttcctaaagggacgcgacgtgattgcccag
gcatcctctggtacgggcaagacgtccgccttctgcgtctgtctcctgcaagcgtgcgac
ccgcacacgcgtgaggcgcaggccctcatcctctcgccgactcgcgagctggcggtgcag
acgcaggatttgtgcaacaacatcggccaccacatggggctgacggcgtacgcgtgcatc
ggtggcaaaagcacggaggaggacatccgccgtctggagagcggcgtgcacatcatctcc
gggacgcccggccgcgtctttgatatgatccgccgcaagagtctgcgtgtaaacgggctg
aaaaccctcgtgctggacgaggctgacgagatgctgggcaagggcttcaaggctcagatc
cacgacatctaccgcatggtcccgccgctgcagatcatcctcgtttcggcgacgctgccg
gctgacgtgctggagatgacggagaagttcatgacggagcccgcgagcattctcgtgaag
cgggacgaaatcaccgtggatagcgttaagcagtactttgtctctgtcgacgaggagaaa
aacaaattcgatgtcttgatggagctgtatgacagtctcacgatcgcccacgccgtggtc
ttctgcaacacccgcaaaaaggtggagcagctcgccaagaagatgacgcgcgagaagttc
gctgtgaccgccatgcacggcgacatgccccaggcggagcgcgacgagattatgcggcag
ttccgcaatggacacagtcgcgtgctcatcacaacggacctgtgggcgcgtggcattgat
gtggagcgcgtctcgctcgtcctcagctacgatttgccgctctcgcgtgagcagtacatt
caccgcatcggccgcactggtcgcatgggccgcactgggctggccatcaccttcgtgcgc
catgacgagctgcgcttgttgcgcgacattgagcagttctacgcgacgcagattgaggaa
ctccccgccaatatcggcgagcaaatgtag
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