KEGG   Leishmania mexicana: LMXM_31_0715
Entry
LMXM_31_0715      CDS       T02288                                 
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm4p
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
lmi  Leishmania mexicana
Pathway
lmi03018  RNA degradation
lmi03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:lmi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    LMXM_31_0715
  09123 Folding, sorting and degradation
   03018 RNA degradation
    LMXM_31_0715
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lmi03019]
    LMXM_31_0715
   03041 Spliceosome [BR:lmi03041]
    LMXM_31_0715
Messenger RNA biogenesis [BR:lmi03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     LMXM_31_0715
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     LMXM_31_0715
Spliceosome [BR:lmi03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    LMXM_31_0715
SSDB
Motif
Pfam: LSM Chromosome_seg
Other DBs
NCBI-GeneID: 13453503
NCBI-ProteinID: XP_003877914
UniProt: E9B2J5
LinkDB
Position
31:247199..247771
AA seq 190 aa
MHQLKRLSCSHFSFLTPLVFSADLLCSCCDAHPRPIPASLHTRMQAHFQAARGALHIIFC
CYRADPLSLKQTLRMSFARRPITPIEILRNCRGKEVSIELADGETVNGTVMRTDRAMNVV
IKQCTRTGADGESFWKARECFVRGASVKNVRMTDSALVAAPVPSKRKAAGGKGAHAHKEK
SVAGGKRPQK
NT seq 573 nt   +upstreamnt  +downstreamnt
atgcaccaattgaaacgcctgtcttgctctcacttttcttttttgacccctctggtcttc
tccgcggatctcttgtgctcctgttgtgacgcgcacccacgaccaattcccgcttccctg
cacacacgcatgcaagcacacttccaggcggcaagaggtgctctccacataatattttgt
tgttatcgagcagaccctctttccctcaaacagacgctcagaatgagtttcgcacgccgg
ccaatcactcccattgagatcttgcgtaactgccgcggcaaggaggtctccatcgaactt
gcggacggcgagactgtgaacggcaccgtcatgcgcacggatcgtgccatgaacgtggtg
atcaagcagtgcactcgcacgggcgctgacggcgagtcgttttggaaggcgcgtgagtgt
tttgtccgtggcgccagcgtgaaaaatgtgcgtatgacggacagtgcacttgtcgctgct
ccggtgccatcgaaacgcaaggcggcaggcggcaaaggcgcccatgcccacaaggagaaa
tccgtagcaggtggaaagcggccgcagaagtag

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