Leishmania mexicana: LMXM_34_3950
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Entry
LMXM_34_3950 CDS
T02288
Name
(RefSeq) U5 snRNA-associated splicing factor
KO
K12856
pre-mRNA-processing factor 8
Organism
lmi
Leishmania mexicana
Pathway
lmi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lmi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
LMXM_34_3950
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lmi03041
]
LMXM_34_3950
Spliceosome [BR:
lmi03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
LMXM_34_3950
Complex C
U5 SnRNP specific factors
LMXM_34_3950
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
U5_2-snRNA_bdg
PRO8NT
RRM_4
PROCT
DUF5480
Motif
Other DBs
NCBI-GeneID:
13451107
NCBI-ProteinID:
XP_003879390
UniProt:
E9B6S3
LinkDB
All DBs
Position
34:1455392..1462675
Genome browser
AA seq
2427 aa
AA seq
DB search
MSASTPPGFEDDDDLVVVDPALLAEMEEEEQKESRKQQILTWQRMNTERYGFRAAYRAAV
WEKDLMPPEFIRKVVKDNGDLGGKRFKSERKLCVGMLPYIPLALFKLLENMPMPWEEARY
VTVVYHVGGVLTIVDDTPTVAEPLYVSQWGSMWTKMRANKVELLQEGGGFRRAVHKGDEN
EPPLDFADYLMDRVPPPPVLDDLDEEDNAGIVGWFYDPFPRLVAPNQIRGPRRPNGYYFT
LDVMEVLYRNASPILPTLDDRNYFYLWDLKSFYAAKAMHLSIPRGPKFEAPPAIRVKQDE
DDDWTEFNDLRRIIHRDNPRKPRFTMLTERQIAFPFLYGSVVNGVELAPYHYPATVRVEN
DDPELPCFTFHPSLNAIKAVEKNYTDVPRAQAALCSSTWHRAGGQNVENTADVPLELPDD
FEPFLSSLPLEQPNTKTGLSLLFAPAPYNSFEGGMKRRIDVPLCDKWYQDPPDLLTTDDR
DKILRSYTQLLKHHVKRSLQHTVRQRGSAAAAATAAEGAGTMDMSAMQEKRRLEKMAGMR
YFSKTRMEWLEAALQVMRQGHNMLVQLINMKCLPYVHIDYNFEAKPTRTLTTKEIKKSRL
GPAFHMIRELLGFMKRLIDMHVMYRLGSTDALQLADATQYLFSHVGVLTGVYRYKLRAMR
QIKRSRDLKHMLYSKFNVGGVPSGPGNGFWGPAWRVWVFFMRGMTPLLQRYLSNLTDRVL
HGRLQKGKMAGKKITRQRVEPDKDVNIKEAFRRELREMLPDNVKASVIVTMDQHMNEAFR
HWRAGLPWSVPGLAKPLTDLVGKYVKLRSEEYIRTTQLQRRRIAEGDTVDKQAFMKNLGR
LTRLKLMDEQRRQRRYMTGEGTAAIMGPAEATEIYRMMANWLNDRGFKKISFPDPSKTAE
LSLLQLSLNRLRDQHNIANRLTANQREEQARIEESFNAPHEALSRIVDALAHQRRFKNVE
VEYMDNFSHLYPLYTVVPQEKMIDSFLDQYLWYKAMNVQRLFPNWVKPSDVEPLPQLVYK
WCEGINNIPDIWDVSHDESVVLLHSNLEDAFYDNVDWNFFRPMLELIMDKSLVDYIVSRH
DVVVEFKDMSYHHYKGLIRGFMFSSFLAQYWGLVMDVLLLGTQRSKEIAGTALKPNPFMS
FFRDPYLAASHPIRAYCRYKNEVYIVVRYTKTEADEVRRRYLEETKSDPEMRAINASVYG
FKNAKEWPRDARMRLFLSDVNLARAVLWEFRSRLPPSMATINDANSFASVYSKDNPNLLF
EMAGFSVRLLPVVRTEADILESESMWSLRNHTSKDISCRAFLQVTKEHINMIRNKARRTV
MMVGSSTFHSIAAKWNALITEIVPYYREAILGTEELQAILARAEHRMQARVMMALNSRAK
SRFPPAMFYAPSDLGGLGMLSVGHSLIPAKDTIYSKTTSTGVQFFYAGLTNEEGIPIPNV
LQYYTPWETEIKESEKAWLEFRTREREAKARGGRVSLDDIEDIIDKGIPRIRVRFSRHAP
LFHFDTGFRARMEFQRYLAGKYLKNWWFHMEHDGNICGGVMERYRADMNNALGGVEAILE
HSLFKGTGFPSWEGIEFDRSGGFENSKKDTKLAKQQRAGLSKVPNQRFALWWSPTINRSD
IQAGFESKVETTGVFMCGKLETIKKSLIKIFSGSLWEKSHGAVVNDVASKLKDSLMDLGA
ASITLQQQHPQKSYTFTSSSADVILVSAARWSVSSKPTSLADEVGDVYQHSTTSKFWIDV
QLRWGNYDSHNIAEYARKKFYEYSTARMYPFPAGVVVAIDLAYNCHSAFGYWIPGMKPFM
SKLMPVIMKNNITLNTLRDRMKRDLGLFSSAPTEASLSDTNIAELFSSGMRTWIVDDSAT
YVTSEQPTPDGGKKFKSENGAVLVFEPVSGSLKMSVVHRSVFSGQKRRSKLAREKAAEEI
ASWLRSCPPSERPSKIIVTRSRFRQTLHNMLVLDYPNIIIGQSDLNLPLPMVLRHSRLVE
LRIAAMESKGWEFCIYDDWQQSLQFQPITCFNLLNLVLRGYHINLQRTRQILVPDLHVEV
SASHFWPTYAARQEWEQVSIRLQEMIIADAARRMNVSPKDFTEKEKEGILLGKRMANVEI
QQEEMKEIEAMRRTKLAETQTVNVVTSSGDVVKRKVKAAFDFGVTALNNNWRPRSLADAA
FLDENTPITFDAAGATGASDQLIFSEDAIQKLLACCDVKVQCCAYMFGHALPDSPNIKEV
LCVMIPPQFGTAVEARTPPRIPFDAAALQEANLSFLGLIRIGESEAQLTSHDLALQARAL
IANERMVPQGFVTAVLEMSEEGVMVRCYSTTADGIAWAQSEYERLLKRTPEATDPSFSSP
CRGTLSSEARSFFLVPADRAWNYFFKGALWRENTEYDVVVDVPLPFFHALHRPDHFLNFT
RIGDGAEVVDEADPNDVFGNEAGLAGE
NT seq
7284 nt
NT seq
+upstream
nt +downstream
nt
atgagcgcgtcgacccctcctggatttgaggacgatgatgacttggtcgttgtcgacccg
gcgctgctcgcggagatggaagaggaggagcaaaaggagtcgaggaagcagcagatcctt
acatggcagcgcatgaacacggaacggtacgggttccgcgcggcgtaccgggcggcagtg
tgggagaaagacttgatgccgccagagttcatccgcaaggtggtgaaggacaacggtgac
ctcggcggaaagcgcttcaagtcggagcgcaagctgtgcgtgggtatgctgccctacatt
ccactggctctgttcaagctcctggaaaacatgccaatgccctgggaggaggcgcgctac
gtgaccgtagtgtaccacgtcggaggcgtgctcaccatcgtggacgacacccccacagtg
gcggagccgctgtacgtgtcgcagtggggctcgatgtggacgaagatgcgcgccaacaag
gtagagctgcttcaagaaggtggcggcttcaggcgcgcggtgcacaagggagacgaaaac
gagccaccgctggacttcgccgactacctcatggaccgcgtgccgcctccgccggtgctc
gacgatctcgatgaggaggacaacgccggcatcgtgggctggttttatgatccttttccg
cgcctggtggctcccaaccagattcgcggccctcggcggccaaatgggtactacttcacc
cttgatgtgatggaggtgctgtaccgcaacgcgtcacccattctcccgacgcttgacgac
cggaactacttttacctgtgggacctcaagtccttctacgctgccaaagcgatgcacctg
tccattccacgcggcccgaagttcgaggccccgcctgccattcgcgtgaagcaggacgag
gacgacgactggacggagttcaacgacctgcgtcgcatcatccaccgcgacaatccgcgc
aagccacgctttacgatgctgacggagcggcagatcgccttccctttcctgtatggctca
gttgtgaacggggtcgaactggcgccgtatcactacccagccaccgtgcgcgtcgagaac
gacgaccccgagctaccgtgctttactttccacccctccctgaacgcaatcaaagcagtg
gagaagaattacacagacgtgccgcgcgcacaggctgcgttgtgctcctctacctggcat
cgcgcgggcggccagaatgttgagaacaccgcggacgtgccgttagagctgccggacgac
tttgagccgtttttgtcatcgctcccgctggagcagcccaacacgaagacgggcctgtcg
ctgctctttgctccggcgccctacaactcatttgagggaggcatgaagcggcgcatcgat
gtgccgctgtgcgacaagtggtaccaggacccaccggacctgctcacgacggacgaccga
gacaagattctgcgcagctatacccagcttctcaagcaccacgtgaagcgctctctgcag
cacactgtgcgccaacggggcagtgccgcagcggccgccacagcagctgaaggggcgggg
acgatggacatgagcgcgatgcaggagaagcgccggctggagaagatggcaggcatgcgg
tacttttccaagacgcgcatggagtggctagaagcggcgttgcaggtgatgcggcagggt
cacaacatgcttgttcagctcatcaacatgaagtgcctgccgtatgtgcacatcgactac
aacttcgaggcgaagccgacccgcacgctgacgacgaaggagatcaagaagagccggctc
ggccccgcgtttcacatgatccgtgagctgctaggcttcatgaagcggctcatcgacatg
catgtgatgtatcggttagggtccacggacgcgctgcagttggcggatgctacccagtac
ctcttctcccacgtcggcgtgctgacgggggtgtaccgctacaagctgcgggctatgcga
cagatcaagaggagtcgtgaccttaagcacatgctgtacagcaagtttaacgttggtggt
gtgccaagtgggcctggcaatggtttttggggcccggcgtggcgtgtgtgggtattcttc
atgcgcggcatgacaccgctgctgcagcgctacctgagcaatctgaccgaccgcgtgctg
cacggccgtttgcagaaagggaagatggcgggcaagaaaatcacacgtcaacgggtcgag
ccggacaaggacgtgaacatcaaggaggcgttccgccgtgagctgcgagagatgctgccg
gacaacgtgaaggcttcggtcattgtgacgatggaccagcacatgaacgaggcgttccgg
cactggcgcgccggcctgccgtggagcgtgcctgggctcgcgaagccgctgacagacctc
gtcggtaagtacgtgaagcttcgctctgaggaatacatccgcacgacgcagctgcagcgg
cgtcgcattgctgagggcgatactgtggacaagcaggccttcatgaaaaacctagggcgc
ttgacgcgactgaagctcatggatgagcagcgccgccagcgtcgatacatgacaggggag
ggcaccgctgcgattatggggcccgctgaggcgacggagatttatcgcatgatggcgaac
tggctcaatgaccgcggcttcaagaagatctctttcccagatccatccaagacggcagag
ctgtcgctgctgcagctttccctcaatcgactgcgtgaccagcacaacatcgcgaatcgc
ctcacggcgaaccagcgtgaggagcaggcccgcatcgaggagtcctttaacgcgccccac
gaggccctgtcccgcatcgtagacgcccttgcacaccagcgccgcttcaaaaacgtcgag
gtggagtacatggacaacttttcacacctgtacccgctctacactgtcgtgccgcaggag
aagatgattgactccttcctcgaccagtacctctggtacaaggcgatgaatgtgcagcgt
ctctttccaaattgggtgaagccgtccgatgtggagccgctgccacagctggtgtacaag
tggtgcgagggcatcaacaacatccccgatatatgggacgtgtcgcacgacgagtctgtg
gtgctgttgcacagcaacctggaggacgccttctacgacaacgtggactggaacttcttc
cgtccgatgctagagctgatcatggataagtctctcgtagactacattgtgagccggcac
gacgtcgtggtggagttcaaggacatgagctaccatcactacaaggggcttatccgtggc
ttcatgttttcgtcattcctggcgcagtactgggggctcgtaatggatgtgctgctgctc
ggcacgcagcgaagcaaggagattgccggaacggcgttgaagccgaaccccttcatgtcc
ttcttccgagacccatacctcgccgcgtcgcatccgattcgcgcgtactgccggtacaag
aacgaggtctacatagtggtgcgttacaccaagacggaggcggatgaggtgcggcgccgc
tacctggaggagaccaagtcggatccggagatgcgtgccattaacgcatccgtctacggg
ttcaagaacgcgaaggagtggccccgcgacgcgcggatgcgccttttcctgtctgacgta
aacttggcgcgcgcggtgctgtgggagttccgcagtcgcctgccgccgtcgatggcgacc
atcaacgacgcaaacagctttgccagcgtttactccaaggacaaccccaacctgctcttc
gaaatggcaggcttctccgtgcggctgctgccagtggtgcggaccgaggcggatattctc
gagagcgagtctatgtggagtctgcgcaatcacacatccaaggacatctcttgccgagcc
ttcttgcaagtgacgaaggagcatatcaacatgatccgcaacaaggcgcgccgcactgtg
atgatggtcggcagctccacctttcacagcatcgcggccaagtggaacgcgctgattacg
gagattgtgccgtactatcgcgaggcgattctcgggacggaggagctgcaggcgatcctg
gcgcgcgcggagcaccgcatgcaggcgcgtgtgatgatggcgctgaactcgcgcgctaag
tcgcgcttcccaccggcgatgttctacgccccgtccgatcttggcggcctcggcatgctc
tcggtcgggcactcgctgatccctgcgaaggacaccatctactcgaagacgaccagcacc
ggcgtccagttcttctacgccggcctcaccaacgaggagggcatcccgatccccaacgtg
ctgcagtattacacgccgtgggaaacggaaatcaaggagagcgagaaggcatggctggaa
ttccgcacccgcgagcgtgaggccaaggcgcgtggcggccgcgtgtcgctggacgacatt
gaggacatcatcgacaagggtatcccgcgcatccgcgtgcgcttctcgcgacacgcgccg
ctcttccacttcgacaccggcttccgggcccgcatggagttccagcgatacctggccggc
aagtacttgaagaactggtggtttcacatggagcacgacggcaacatctgcggcggcgtg
atggagcgctaccgcgctgatatgaacaacgctctcggtggagtggaggcgattttggag
cacagtctcttcaaagggacgggatttccgtcgtgggagggcatcgagtttgaccgctcc
ggcggctttgaaaactcgaagaaggatacaaaacttgcaaagcagcagcgggccggtctg
agcaaggtgccgaaccagcggttcgcgctttggtggagtcctacgatcaaccgctccgac
atccaggccggcttcgagtcgaaggtggagacgacgggtgtcttcatgtgcggtaagctg
gagaccatcaagaagtcgctcatcaagatctttagcggctctctctgggagaagtcgcac
ggcgccgtcgtgaacgatgtggcgagcaagctgaaggacagcctcatggacctcggcgca
gcctccataacgctgcaacagcagcacccacagaagtcctacaccttcacgagctcatct
gccgatgtcatcttggtgagcgcggcgcgctggtcggtgtcgtcgaagccgaccagtctc
gccgacgaggtcggcgacgtgtaccagcacagcaccacctcgaagttctggatcgatgtg
cagctgcggtggggaaactacgacagccacaacattgccgagtacgcgagaaagaagttc
tacgagtactcgacggcgcggatgtatccgtttcctgccggcgttgtcgttgcgatcgac
ctggcctacaactgccacagcgcgtttggctactggatacctggcatgaagccgttcatg
agtaagctgatgcccgtcattatgaagaacaacatcaccctcaacacgctgcgcgaccgc
atgaagcgagacctgggactcttcagctctgccccgacggaggcgagcctgtccgacaca
aacatcgctgaactgttttccagcgggatgcgcacgtggattgtagacgacagcgccacg
tatgtgacgagcgagcagccgaccccggacggcggcaagaagttcaagtccgagaatggc
gcggtgctcgtctttgagcccgtctccggctctttgaagatgagcgtggtgcaccggagc
gtcttttccgggcagaagcgccgctcgaagctggcgcgcgagaaggcagcggaggaaatt
gcgtcgtggctacgtagctgcccgcctagcgagcgtccgagcaagatcatcgtcacccgc
tcccgcttccgccagacgctgcataacatgctggtgctagactacccgaacatcatcatt
ggccaaagcgacttgaacctgccgctgccgatggtgctgcgtcacagccgcctcgtcgag
ctgcgcattgcggcgatggaaagcaaagggtgggagttctgcatctacgacgactggcag
cagagtctgcagttccaaccgatcacgtgcttcaacctactgaacctggttctgcgtggc
taccatataaacctgcagcgcacacggcagattctcgtgcctgacctgcacgtcgaggtg
agcgcgtctcacttctggcccacgtacgcggcccgtcaggaatgggagcaggtgtccatc
cgtctgcaggagatgattatcgccgacgccgcgcgtcgcatgaacgtgagcccgaaggac
ttcacggaaaaggagaaggagggcattttgctaggcaagagaatggcgaatgtggagatt
cagcaggaggagatgaaggagatcgaggccatgcggcgcacaaagttggcagagacacag
acggtcaacgttgtcacgagcagcggcgacgtcgtaaagcgcaaggtgaaggccgccttc
gactttggagtgactgcgttgaacaacaactggcgtccccgctccttggccgatgccgcc
tttcttgacgagaacacccccatcaccttcgacgccgccggcgccaccggggcaagcgac
cagctcatcttctctgaggacgcgattcagaagctgctggcgtgctgcgacgtcaaggtt
cagtgctgcgcgtacatgtttggccatgcactgcccgactcgccaaatataaaggaggtg
ctgtgtgtcatgatcccgccgcagtttgggacggccgtcgaggcccgcacgccaccacgc
attccgtttgacgcggcagcactgcaggaggcgaacctgtccttcttgggactcataagg
attggcgagagcgaggcgcagctgacctcgcacgacctcgccctccaggcgcgtgcgctc
atcgcgaacgagaggatggtgcctcaagggtttgtgactgccgtcctggagatgtcggag
gagggggtgatggtgcggtgttacagcaccaccgcggacggcattgcatgggcgcagagt
gagtacgagcggttgctaaagaggactccggaggcgacggacccatccttttcctctccg
tgccgcggcaccctttcctcagaggcgcgcagcttcttcctggtaccggcggatcgggcc
tggaactactttttcaagggggcgctgtggcgcgagaacaccgagtacgacgtcgtcgtc
gacgtgccgttgcccttcttccacgcactgcaccgcccagatcactttcttaacttcact
cgcatcggtgacggcgccgaggtggtggatgaggcggacccaaacgacgtgttcggcaac
gaggccgggctggcaggtgagtga
DBGET
integrated database retrieval system
