Leishmania mexicana: LMXM_36_0800
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Entry
LMXM_36_0800 CDS
T02288
Name
(RefSeq) hypothetical protein
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
lmi
Leishmania mexicana
Pathway
lmi03022
Basal transcription factors
lmi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lmi00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
LMXM_36_0800
09124 Replication and repair
03420 Nucleotide excision repair
LMXM_36_0800
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lmi03021
]
LMXM_36_0800
03400 DNA repair and recombination proteins [BR:
lmi03400
]
LMXM_36_0800
Transcription machinery [BR:
lmi03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
LMXM_36_0800
DNA repair and recombination proteins [BR:
lmi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
LMXM_36_0800
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tfb2
Helicase_C_3
Tfb2_C
Motif
Other DBs
NCBI-GeneID:
13448216
NCBI-ProteinID:
XP_003874425
UniProt:
E9ASK0
LinkDB
All DBs
Position
20:<277678..>279357
Genome browser
AA seq
559 aa
AA seq
DB search
MSSSSSALDVPLVEVICSYPTREVLCAECPALLLLVYQHVVAELQAGRRAVDVFRGTSRQ
DHLSELLAVRSLSKLFERLYPLSQSCSLDESTAGSQFWGQVRVTLEAAWAPPHDAKARAL
LTQVRGQPRFHFCGPHDAETPGEGYPLHPVSLERALAASKRFLRTAMTCALDGSTDALAG
RQPELRAVLQLAHLVPDTPSTGAPPKKGVTPEGISFCMVSLQQRWWVLVNAALERVLLLT
RAVVNRNGSTSASSGVTKPLLWQLLAVLSVLDTAHYVFAFPEREQDLAAHHLLARLSEVG
LVYPLLSNDRKCFVLSPDFLHAIHWHASAPLSLTFNHHLVRSVSGAGVGDIRREDTDTII
TETNFRLYAYTDDADLLNILNQFAELEEIVNGNLHCYRVTRDSFAAAMRKGITAAQVLRF
LSLRAHPSMLRRHGEREESGDTAAPSSAGGVSSSLTFSAPHRRGAVPGTCGGTTAIDAVS
TIVVPQSFCDQMRMWESECHRVVFEHHVVLLRHMSMEQQKAVTAYLADAGEVDAIVHAER
GYMVIREEVFERLVAPLLG
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
atgtcctcgagctcttcggcattggacgtgccgcttgtagaagtcatctgcagctatcca
acccgcgaggtgctatgcgccgagtgtcccgcactgctgctgctcgtctaccagcacgtt
gtagcggagctgcaggcggggcgacgcgctgtggacgtgttccgtggcacctctcgacag
gaccatctgagcgaactgctcgctgtgcgctccttgtcgaagctgtttgagcgtctttac
ccgctgtcacagtcttgcagcctcgatgagagcactgcgggctcgcagttctgggggcag
gtacgggtgacgttggaggccgcgtgggccccgccgcacgacgccaaggcgcgtgccctt
cttacgcaggtacgcggccagccgcggttccacttttgcgggccgcacgacgccgagaca
cccggggagggctacccactgcaccccgtatccctggagcgggccttggcagcaagcaag
cgctttctccgcactgcgatgacctgcgcactggacgggtcaacggatgccctggcgggg
cggcaaccggaactgcgcgcggtgctgcagctggcccacctggttcccgatactccgtcg
acgggagcacctccgaagaaaggagtcacgccggaggggatcagcttctgcatggtgtcg
ctgcagcagcggtggtgggtgctggtgaacgcggcgctggagcgcgttctgctgctcact
cgcgctgtcgtgaacaggaacggtagcacgagcgccagcagcggcgtcacaaagccgctt
ctgtggcagctgctggctgtgctgtcggtgctagacactgcgcactacgtcttcgccttc
ccagagagggagcaggatctcgcggctcaccatcttctcgcacggctgtccgaggtcggt
ctggtgtaccccttactcagcaacgaccgcaagtgctttgtcttgagtcctgacttcctg
cacgccattcactggcacgcgagtgcgccgctctccctcaccttcaaccatcacctcgtg
cgaagcgttagcggtgccggcgtcggcgacatacggcgcgaggacaccgacaccatcatc
accgaaacgaacttccgtctgtacgcctacaccgacgatgccgacctgctcaacattttg
aaccagttcgcggagctggaggagattgtgaacgggaatctccactgctaccgggtgacg
cgggacagctttgctgccgcgatgcgcaagggcattactgccgcgcaggtgctacgcttt
ctttcgctgcgagcgcaccccagcatgcttcgccggcacggggagcgggaggagagcggt
gacacggcagcgccatcatccgctggcggggtctcctcttccttgactttttcagcgccc
catcgtcgcggggcggttccgggtacgtgtgggggcaccaccgccattgatgcggtgtcg
acgattgtggttccgcagtccttctgcgaccaaatgcgcatgtgggagagcgagtgtcac
cgcgtggtgtttgagcaccacgttgtcctgctacgccacatgtcaatggagcagcagaag
gcggtgacagcgtatttggccgatgcgggggaggtcgatgccattgtgcacgccgagcgc
ggctacatggtgattcgtgaggaggttttcgagcgccttgtcgcaccacttctggggtga
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