Leishmania mexicana: LMXM_36_3000
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Entry
LMXM_36_3000 CDS
T02288
Name
(RefSeq) putative ATP-dependent RNA helicase
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
lmi
Leishmania mexicana
Pathway
lmi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lmi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LMXM_36_3000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lmi03019
]
LMXM_36_3000
03041 Spliceosome [BR:
lmi03041
]
LMXM_36_3000
03009 Ribosome biogenesis [BR:
lmi03009
]
LMXM_36_3000
03016 Transfer RNA biogenesis [BR:
lmi03016
]
LMXM_36_3000
Enzymes [BR:
lmi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
LMXM_36_3000
Messenger RNA biogenesis [BR:
lmi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
LMXM_36_3000
Spliceosome [BR:
lmi03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
LMXM_36_3000
Complex C
U4/U6.U5 tri-SnRNP related factors
LMXM_36_3000
Ribosome biogenesis [BR:
lmi03009
]
Eukaryotic type
Pre-60S particles
Helicases
LMXM_36_3000
Transfer RNA biogenesis [BR:
lmi03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
LMXM_36_3000
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
DEAD
MTR4_beta-barrel
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
ATPase_2
nSTAND3
FlxA
PhoH
AAA_22
AAA_16
Motif
Other DBs
NCBI-GeneID:
13448106
NCBI-ProteinID:
XP_003874652
UniProt:
E9AT78
LinkDB
All DBs
Position
20:complement(1204850..1207714)
Genome browser
AA seq
954 aa
AA seq
DB search
MSDRREDEPAAKRTRREVDPAITFPYELDTFQKTSIDALEEGDSVLVSAHTSAGKTTVAL
YAIAKALREKKRVIYTSPIKALSNQKFREFSDKFDSVGLMTGDTTIKADADCLVMTTEIL
RSMLYRGTEMLREVGCVVFDEVHYMRDKSRGVVWEETISLLPEGCQYVFLSATIPNAREF
ADWVESIHPTTKVHVIHTDYRPVPLQHYLYPAGADGIFLIVDEKGKFRDDNFGKAIASMG
TEGVANGVGAAGPANGSSKDPRGNHKGGGGRSHGGSSQSMMEIVKLVMDRNMYPVIVFSF
AKAECERNALALSRLNFNNTEEDALVMEVFNNAMESLAEEDRKLPAIEHLHPLLKRGVGI
HHSGLLPILKEVVEILFQAGLVKVLFSTETFSMGLNMPARTVVFTSVKKFDGEKNRYLTG
GEYIQMSGRAGRRGLDRVGVVIAMVDEAVEPDTLKQLTGGGADVLLSSFHLTYNMVLNLL
RVEDVDPEFMMKRSFSQFQRLRDKPALEEKGAALRRSIEEINLTHESAFRQYTICEDMIA
KKRNEVDHILRQPKFLKNWVQTGRFVHIVRASDQLDFGWGVCRSFAAKSTNPNFSDPSTF
SIQAAVICMKADASNPSALTPCPVSEYTSEKADLYTVTFDFSDVQSLSTLKTNLPENPDS
ERGRAEVVQILSKLQRQFGNSIPVLTSAQMGAEDAQLSKLQTQVSKLQKQLEDNILATSP
TPELQEEFEQYKRKADLEAQLEQVKGELAGMSKAVFSEELKQMMRVLRRLDYIDKDNIIL
RKARVACEITTTDENEILLTELLFKGVLNSMETEMIVALLSCLVNVHRTPDGFSLPQEFE
QPLKDLNEIVTRIATVSAESGLMQENSSVEKVMPSLMEVTYLWAKGAKFVDLVSKTTAYE
GDIVRMMRRLEEMLRQLASAARSPAIGSIELHEKFLKGIQLIKRDIVFASSLYL
NT seq
2865 nt
NT seq
+upstream
nt +downstream
nt
atgtcagacagacgcgaagacgaaccggcggcgaagcggacacgccgcgaggtcgacccg
gccatcactttcccctatgagctcgacacgttccagaagacgagtatcgacgctctcgag
gaaggcgacagcgttctagtgtcggcgcacacgtcggcaggtaagactaccgtggcgctc
tacgccatcgccaaggcgctgcgagagaagaagcgcgtcatctacacctctcccatcaag
gcccttagcaaccaaaagttccgcgagttctccgacaagttcgactccgtcggtctcatg
accggtgacacaaccatcaaggcggacgcggactgtcttgtcatgacgacagagattcta
cgcagcatgctgtaccgcggcaccgaaatgctgcgggaggtgggctgcgtcgtcttcgat
gaggtgcactacatgcgcgacaagtcgcgtggcgtggtgtgggaagaaacaatcagctta
ctgcctgagggatgccagtacgttttcctctccgccaccatcccgaacgcgcgcgagttt
gcggactgggtggagagcatccatcccaccacaaaggtacacgtcattcacacagactac
cggccagtgccgctacagcactacctgtatccggccggagccgacggcatcttcctcatc
gtggatgaaaaaggcaaattccgcgatgacaacttcggcaaggctatcgcgtcgatgggg
acggagggcgtcgcaaacggtgtgggtgcggcaggcccagccaacggctcctccaaagac
ccgcgcgggaaccacaagggcggcggtggccgcagtcacggtgggtcgtcgcagtccatg
atggagatcgtcaaactcgtgatggaccgcaacatgtaccctgtgatcgtcttctccttc
gccaaggcggagtgcgagcgcaacgccctcgcgctctcgcggctaaacttcaataacacc
gaagaggatgctctcgtgatggaggtgttcaacaatgctatggagtcgctggcggaggag
gaccggaagctgcccgctattgagcatcttcacccgctcctgaagcgcggtgtcggtatc
caccactccggtctccttccgattctgaaggaggttgtcgagattcttttccaggcgggt
ttggtcaaggttctcttctccaccgagactttctccatggggcttaacatgccggcccgt
accgtcgtcttcacctctgtcaagaagttcgacggcgagaagaaccgctacctcaccggc
ggcgagtacattcaaatgtcggggcgcgccggccgtcgtggcctcgaccgcgttggcgtt
gtcattgccatggtggacgaggcagtggagcccgacacgctgaagcagctgaccggcggt
ggcgccgacgtcctgctcagcagtttccacctgacgtacaatatggtgctgaacctgctg
cgcgtcgaggacgtcgatcctgaatttatgatgaagcgcagcttctcgcaattccagcgc
ctgcgtgacaagccagcgttagaggagaagggtgctgctctgcgcaggtccatcgaggag
atcaacctcacccacgagagcgcctttcggcagtacacgatttgcgaggacatgatcgcg
aagaagaggaacgaggtggaccacattctgcgccagcccaagttcctcaagaactgggtg
cagacgggccgttttgtgcatatcgttcgcgcctccgatcagctcgactttggctggggc
gtttgccgctcgtttgccgcaaagagcaccaacccaaacttcagcgaccccagcaccttc
tccatccaagctgctgtgatctgcatgaaggcggacgcgtcgaatccgagcgctttgacg
ccgtgcccggtcagcgagtacacctcggagaaggcggacctatacacggtgacgttcgac
ttctcagacgtccagtccctttcgacgctgaagacaaaccttcccgaaaacccggactcc
gagcgggggcgtgctgaggtggtgcaaattctgtcgaagctgcagcgccagtttggtaac
agcattcccgtgctcacctctgcgcagatgggtgccgaggacgcgcagctgagtaagctg
cagacgcaggtgtcgaagctgcaaaagcagctagaggacaacattcttgccacatccccc
acaccagagctgcaggaggagtttgagcagtacaagcgaaaggcagacctcgaggctcag
ttggagcaggtgaagggtgaattagccggcatgagcaaggcggtcttctccgaagagctg
aagcagatgatgcgtgtgctgcgtcgcctggactacatcgataaggacaacatcattctc
cgcaaggcccgcgtagcgtgcgagataacgacgacagacgaaaatgaaattctgctgacg
gagctgctcttcaaaggcgtgctgaactcgatggagacggagatgattgtggctctctta
tcatgtctcgtcaacgtgcaccgcaccccagatggcttctcgttgccgcaggagttcgag
cagccgctgaaggacctcaacgagatcgttactcgcatcgccactgttagcgccgaaagc
ggcctgatgcaagaaaacagttcggtggagaaggtcatgccgtcactcatggaggtaacc
tacctgtgggcaaaaggggcgaagttcgtcgatctcgtgagcaagaccacggcgtacgag
ggtgatattgtgcgcatgatgcgtcgtctggaggagatgctgcgccagctggcctccgcg
gcgcggtcgccggctatcggcagcatcgaattgcacgaaaagttcctcaagggcatccag
ctcatcaagcgtgatatcgttttcgcgtcatcgctgtacttgtag
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