Larus michahellis (yellow-legged gull): 141733926
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Entry
141733926 CDS
T11135
Symbol
COL2A1
Name
(RefSeq) collagen alpha-1(II) chain
KO
K19719
collagen type II alpha
Organism
lmic Larus michahellis (yellow-legged gull)
Pathway
lmic04510
Focal adhesion
lmic04512
ECM-receptor interaction
lmic04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
lmic00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
141733926 (COL2A1)
04518 Integrin signaling
141733926 (COL2A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
141733926 (COL2A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
lmic00536
]
141733926 (COL2A1)
Glycosaminoglycan binding proteins [BR:
lmic00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
141733926 (COL2A1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
141733926
NCBI-ProteinID:
XP_074421111
LinkDB
All DBs
Position
22:3644892..3667297
Genome browser
AA seq
1487 aa
AA seq
DB search
MPGRRPLRLAAALAALLLATVAAQDRDLPEAGSCLQEGQRYRDKDVWKPEPCRICVCDTG
TVLCDEIICEELRDCPSPEIPFGECCPICPTDQPSAAGQPGPKGQKGEPGDIKDVVGPRG
PPGPQGPAGEQGQRGDRGEKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFA
AQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPSGAPGPQGFQGNPGEPGEPGAAGPMG
PRGPPGPPGKPGDDGETGKPGKSGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKG
EAGAPGAKGESGSPGENGSPGPMGPRGLPGERGRPGPSGAAGARGNDGLPGPAGPPGPVG
PAGAPGFPGAPGSKGEAGPTGARGPEGAQGPRGESGTPGSPGPAGAPGNPGTDGIPGAKG
SAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGETGPAGPQG
APGPAGEEGKRGARGEPGAAGPVGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPAGLAG
PKGATGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPTGAPGEDGRPGPPGPQGARGQPG
VMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPG
PSGFQGLPGPPGPPGESGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRG
LPGTPGTDGPKGATGPAGPNGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPG
KDGARGLTGPIGPPGPAGPNGEKGESGPPGPSGAAGARGAPGERGEPGAPGPAGFAGPPG
ADGQPGAKGEQGEPGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPG
AAGRVGPPGPNGNPGPPGPPGSAGKDGPKGARGDAGPPGRAGDPGLQGPAGPPGEKGEPG
EDGPAGPDGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGSAGDRGPPG
PVGPPGLTGPAGEPGREGNPGSDGPPGRDGAAGVKGDRGETGPVGAPGAPGAPGAPGPVG
PTGKQGDRGETGAQGPMGPSGPAGARGMPGPQGPRGDKGETGEAGERGLKGHRGFTGLQG
LPGPPGPSGDQGAAGPAGPSGPRGPPGPVGPSGKDGSNGMPGPIGPPGPRGRSGEPGPAG
PPGNPGPPGPPGPPGTGIDMSAFAGLGQPEKGPDPIRYMRADEAAGSLRQHDVEVDATLK
SLNNQIESIRSPEGSKKNPARTCRDIKLCHPEWKSGDYWIDPNQGCTLDAIKVFCNMETG
ETCVYPNPSSIPKKNWWTSKTKDKKHVWFAETINGGFHFSYGDEDLAPNTANIQMTFLRL
LSTEGSQNVTYHCKNSIAYMDEETGNLKKAILIQGSNDVEIRAEGNSRFTYSVLEDGCTK
HTGKWGKTVIEYRSQKTSRLPIVDIAPMDIGGADQEFGVDIGPVCFL
NT seq
4464 nt
NT seq
+upstream
nt +downstream
nt
atgcccggccgccgcccgctccgcctcgccgccgccctcgccgccctcctcctcgccacc
gtcgccgcgcaggaccgagacctccccgaggcgggcagctgcctgcaggaggggcagcgc
tatcgcgataaggacgtgtggaagccggagccctgccgcatctgtgtgtgtgacacgggg
accgtcctctgcgacgagatcatctgcgaggagctgcgggactgtcccagccccgaaatc
cccttcggagagtgctgccccatatgccccactgaccagcccagcgctgcggggcaacct
ggccccaagggacagaagggcgaacccggtgacattaaagatgtcgtaggaccccgaggg
cctccgggaccacagggtcccgcaggcgagcagggacaacgaggggaccgcggcgagaag
ggggagaagggtgctcccggcccccggggcagggatggagaacccggcacccctggaaat
cccggccctcccggtccccccggccctcccggcccccccggcctcggtgggaacttcgcg
gctcagatggcgggcggcttcgacgagaaggctggaggcgcgcagatgggcgtcatgcag
ggacccatgggccccatgggaccccgcggcccccccggaccttcaggtgctcccggtccc
caaggatttcaaggcaaccccggtgagcccggcgagcccggcgctgctggtccgatgggt
ccccggggaccgccgggacctcctgggaaacccggtgacgacggtgagacaggaaaaccc
ggcaaatccggcgagcgcggcccccccggcccccagggtgctcgtggcttccccgggact
cccggactccccggagtgaaaggccaccggggctaccccggcttggacggcgccaaggga
gaggcaggggctcctggagccaagggcgaatcggggtcacctggcgagaacggctccccc
ggccccatgggtccccgcgggctgcccggagagagaggacgtcccggcccctccggtgct
gcgggtgctcgtggcaacgatggtctccccggcccagctggaccccctggacccgtcggc
ccagcaggagcccccggcttccccggcgcccccggctcgaagggtgaagctggtcccacc
ggagcacgaggtcctgagggtgcccagggcccccgcggtgaatccggtacccccggctct
cctggccccgctggagcccccggtaacccagggactgacggcatccccggcgcaaagggc
tcggcgggcgccccgggcatcgccggcgctccaggcttccccggcccccgtggccccccc
ggacctcagggtgccaccggcccgctgggacccaagggacagacgggagaacccggcatc
gcgggcttcaaaggcgagcagggaccgaagggcgagacgggacccgcaggaccccaaggt
gcccccgggccggctggcgaggaaggcaagagaggagcccgtggtgaaccgggtgctgcc
ggccccgtgggaccacctggagagaggggtgctcccggcaatcgcggcttccccgggcag
gacgggctggctggacccaagggtgctccgggcgagcgtggccccgctggcctggcgggt
cccaagggagccaccggtgaccccgggcgtcccggagagcccgggctgcccggagccagg
ggtctcaccggccgcccaggagatgctggtcctcaaggcaaagtcggcccaaccggtgct
cccggcgaggacggccgccccggtccccccggcccgcagggtgctcgtggccagcccggc
gtgatgggtttccctggtcccaaaggtgctaatggcgagcccggaaaagccggtgagaaa
ggactccccggtgccccagggctgcggggtctccctggcaaggatggtgagacgggagct
gccggccccccaggacccgccggtcccgcgggcgagagaggagagcaaggagcccccggt
ccctccggcttccaggggctgcccgggccaccaggtccccccggagagagcggcaaacct
ggagatcagggtgttccaggagaagctggtgcccccggtctcgtcggtcccagaggcgaa
cgtggcttccccggtgaacgtggctctcccggcgcacaagggctgcaaggtccccgcggg
ctccccggcacgccgggcaccgacggacccaagggtgcaactggaccagccggccccaac
ggcgcccagggtcccccagggctgcagggaatgcccggcgagagaggagcagccggtatc
gctggtcccaagggagaccggggagacgtcggagagaagggtcccgagggagcccccgga
aaggacggcgcacgcggtctgacaggtcccatcggtccccccggccccgctggccccaac
ggcgagaagggtgaatccggcccccctggtccatccggcgccgccggtgcccgtggtgcc
cccggtgagcgtggtgagcctggtgcccccggtcccgccggatttgccggccccccgggc
gccgacgggcaacccggtgccaaaggcgagcaaggagagcccgggcagaagggtgacgcc
ggtgctcctggtccccaaggtccctccggagcacctgggccacagggtccaactggtgta
actggtcccaaaggagctcggggtgctcagggtccccccggagccaccggattccccggc
gctgccggccgcgtgggaccacccggccctaacggtaacccaggtccccccggccccccc
ggctctgctggcaaagatggtcccaagggtgctcgtggcgatgccggtcccccgggccgt
gccggtgaccccggtctccaaggccccgccggtccccctggcgagaaaggcgaaccaggc
gaggatggccccgcgggtcccgacggtccccccggtccccaaggtttggcaggacagcgc
ggcattgtcggtcttcccggccagcgtggcgagagaggcttccccgggctgccggggcca
tcgggcgaacctgggaaacaaggagcacccggctctgcaggcgaccgaggcccccccggc
cccgtgggaccccctggtctgacgggtcccgccggcgaacctgggcgagaggggaacccc
ggctctgatggcccccccggcagagacggcgcagccggcgtcaagggtgatcgtggcgag
accggccccgtgggtgcccccggcgctcccggtgcccccggcgctcccggccccgtgggt
cccactggcaaacaaggagacagaggcgagacgggtgcacaaggtcccatgggtccctcg
ggtcccgctggtgctcgaggcatgccgggtccccaagggccacgcggtgacaagggtgag
acgggagaggctggagagagagggctgaagggccaccgcggcttcaccgggctgcagggt
cttcccggcccacccggtccctccggagaccaaggtgctgctggtcccgccggtccctcc
ggtcccaggggtccccccggccccgtcggcccctctggcaaagacggctccaacggcatg
cccggccccatcggtccccccggcccccgcggacgaagcggggaaccaggtcccgcgggt
cctcccggaaacccaggtccccccggtcctcccggcccccctggcactggcatcgacatg
tcggctttcgctggcctgggtcagccggagaagggccccgaccccatccgctacatgcgg
gcggacgaggccgccggcagcctgcggcagcacgacgtcgaggtggacgccacgctcaag
tccctcaacaaccagattgagagcatccgcagccccgagggctccaagaagaacccggcc
aggacctgccgcgacatcaagctttgccatcccgagtggaagagcggagactactggatt
gacccgaaccagggctgcaccttggacgccatcaaagttttctgcaacatggagacaggc
gaaacctgcgtctaccccaaccccagcagcatccccaagaagaactggtggaccagcaag
accaaagacaagaagcacgtctggttcgcagagaccattaacggcggtttccattttagc
tacggcgatgaagacctggctcccaacaccgccaacatccagatgaccttcctccgcctc
ctgtccaccgaaggctcccagaacgtcacttaccactgcaagaacagcatcgcctacatg
gacgaggagacgggcaacctgaagaaagccatcctcatccagggatccaacgacgtggag
atcagagccgagggcaacagcaggttcacgtacagcgtcttggaggacggttgcacgaaa
cacactggcaaatggggcaagacagtcattgagtaccggtcgcagaagacctcgcgcctg
cccattgtagatattgcacctatggacattggtggagccgatcaggagtttggcgtggat
attggcccagtctgcttcttgtaa
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