Larus michahellis (yellow-legged gull): 141740925
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Entry
141740925 CDS
T11135
Symbol
SCAF8
Name
(RefSeq) SR-related and CTD-associated factor 8 isoform X1
KO
K13191
RNA-binding protein 16
Organism
lmic Larus michahellis (yellow-legged gull)
Brite
KEGG Orthology (KO) [BR:
lmic00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lmic03021
]
141740925 (SCAF8)
03041 Spliceosome [BR:
lmic03041
]
141740925 (SCAF8)
Transcription machinery [BR:
lmic03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
141740925 (SCAF8)
Spliceosome [BR:
lmic03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
141740925 (SCAF8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
141740925
NCBI-ProteinID:
XP_074436566
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All DBs
Position
3:62997831..63170291
Genome browser
AA seq
1357 aa
AA seq
DB search
MEAVKAFNSELYSLNDYKPPISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKV
PGLYVIDSIVRQSRHQFGQEKDVFAPRFSNNIISTFQNLYRCPGDDKSKIVRVLNLWQKN
NVFKSEIIQPLLDMAAGIPPPVVTPVLPSTTAAMSNNTPGTPVTPVTPANVVQSLPDPWV
SQIANTDTLAAVAQILQSPQGQQLQQLIQTLQIQQQKPQPSLLQALDAGLVVQLQALTAQ
LTAAAAAANTLNPLEQSVSFNKKLMDRFDFGEESEQNEEPKKETPTSQLPLVPESVNNSL
FHQLAEQLQQQNLEHLRQQLLEQQQPQKASPEENQEGNFGSEHSASPSQGSSQQQFLEVE
TNVDDSMDIQQQDMDIDEGQDVAEEEIFEQEEKKSAVRSRSRTRSRSRSRSPRKRRSRSR
SGSRKRKHRKRSRSRSRERKRKSSRSYSSERRAREREKERQKKGLPPIRSKTLSVCSTTL
WVGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYVCMVHRQDAYRALQKLSSGSYKI
GSKIIKIAWALNKGVKTEYKQFWDVDLGVSYIPWEKVKLDDLEGFAEGGMIDQETVNTEW
ETARSSEAAKENIQTTQSAAVDKSTVITTQTEAYTQPVTMLQIPVAPAVPAVSLVPPAFP
VTMSVPPPGYSAIPPPPFLRASFNPSQPPPGYMPPPVPPVVPPPVVPPPVVPPVVPTPLV
QPPLPIAQETMKDVPFTSLVLPVGTVTSNLATPTLSAGSVFNPLPISKPESDEKGSHLAD
LQISSSENSRSVQSDVSSSSGLVGGVQPPSVSSSSGLTGEGQPPNVSSSSGLAGGVQPPS
VSSSSGLVGGVQPPTVSSSSGLAGGVQLPTVSSSSSLAGGVQPTSVSSSPGLMAGVQPPS
VSSSSGLLAGVHPPSVSSSPGLLTGMQPPNVSSSSGVLAGIQPPSVSSNSGLLIMPPPNV
SSSSGLMGVPPPNISNSSGLLAMQHPAGVQNMPHLNISSQRMPGMPLIDIRPGLMPHSPG
PRFPLMQPGMPPQRSIPPPAILDPSLHPPPRGPFPPGDIFNQPERPFGTPGRQNIDSISN
PEKRLPLGGDNIQQEGDRDYRFPPVENRDNLNRPSPVDVRDSVGRPPVDPREAIGRPPVD
GREHFARPHVDMRENFGRPGIDNLGRREHFGFNSDKHWGQRGDYDEREHHAFPIYGGPKG
FHEDRERFRHVNYRFDSRSGPNWNRGFEQDAHRDFDDRRRPWERQRDRDDRDFNFCREIN
GNRFGRDRMSNNWIPPPHPRVFEYFDGATSQRKADNMPQVNGENTETESQPPTAQVQDDP
ELYEKLTSSVEINKEKSDTEADIESEPVVESTETEGT
NT seq
4074 nt
NT seq
+upstream
nt +downstream
nt
atggaggccgtgaaagcctttaacagcgagttgtactcgctaaatgattataagccaccc
atttctaaagctaaaatgacacagatcaccaaggcagcaatcaaggctataaagttctac
aagcacgttgtacagagtgttgagaaattcattcaaaagtgcaaaccagaatacaaggta
cctggtctgtatgtcattgactccattgtgaggcagtcccggcatcagttcggacaagaa
aaggatgtgtttgctccaagattcagcaataacatcatcagcactttccagaatttgtac
cgatgtcctggggatgacaagagtaaaattgttcgagtgctgaatttatggcagaagaat
aacgtgttcaagagtgaaattattcagcctctcttggatatggcagcaggaattcctcct
ccagttgtgacccctgtcttgcccagcactacagctgctatgagcaacaatacaccagga
acgcctgtgactccagttactccagccaatgtggtgcagagtttacctgatccttgggta
tctcagattgctaatacagatacccttgctgctgttgcacagattttacagagtcctcaa
ggccaacagcttcagcagttgatacagacactgcagatacagcagcagaaacctcagcct
tcattacttcaagccctggatgctggtctcgtcgttcagttacaggccctcacagcacaa
cttacagctgcagctgctgctgctaacacgcttaatccactggaacagagtgtctctttt
aataagaagctgatggacaggtttgactttggggaagaatctgaacaaaatgaagaacct
aaaaaggaaactcccacttcccaactgcctctagtaccagaatctgtgaacaactcactt
tttcaccagctagctgaacagctacagcaacaaaatttagaacatctcagacaacagctt
ctggagcaacagcagcctcaaaaggcaagccctgaggagaatcaagaaggaaattttggt
tcagagcactctgcatcaccatcacaagggagcagtcagcagcagtttttagaagtggaa
acaaatgtagatgattcaatggatattcaacaacaggacatggatatagatgaaggacag
gatgttgctgaagaagagatttttgaacaagaagaaaagaaatcagctgttcgttcaaga
tcaagaactcgttcaagatctcgttcaaggtcaccgagaaaacgaaggtctagatcacgg
tctggttctcgtaagcgtaaacacagaaaacgttcacgctcaagatcaagggaaaggaag
agaaagtcatctcggtcatattccagtgaaagaagggctagggaaagggaaaaagaacgt
cagaaaaagggattgcctcctattcggtcaaaaacactaagtgtttgcagtactactctt
tgggtaggtcaagtagacaagaaggctacgcagcaagacttaactaacttgtttgaagaa
ttcggacaaatagagtcaattaatatgattcccccaagaggttgtgcttatgtctgtatg
gttcatagacaagatgcgtatcgggctcttcagaaacttagttctgggtcctataaaatt
ggatctaaaattattaagattgcctgggctttgaataaaggtgtgaaaacagaatacaag
caattctgggatgtggatctgggagtttcatatattccttgggagaaagtaaaattggat
gatttggagggctttgctgaaggtggcatgattgaccaggaaacagtaaatacagaatgg
gaaacagccagaagctcagaagctgctaaagaaaatatccaaactacgcagagtgctgca
gttgataaaagtacagttattacaacgcagacagaagcttacacgcaaccagtcactatg
ctgcagattccagtagctccagctgtgcctgctgttagcttggttccacctgcgtttcct
gtcacaatgtctgtccctcctcctggttatagcgccattcctcctccacccttcttgcga
gcaagcttcaacccttcacagccacctccaggttatatgcctcctccagttccacctgtg
gtcccaccacccgttgtcccaccacccgttgtcccaccagttgttccaacacctttagta
caacctccattaccaattgcacaagagacgatgaaggatgttccttttactagccttgtt
ctaccagttggcacagttactagcaatctagctactccaacgttgtctgctggaagtgtt
tttaatcctctgccaataagcaaaccagaatcagatgaaaagggatcacatcttgcagac
cttcagatttcttccagtgaaaacagtagatctgtgcagagtgatgtctcaagtagctct
ggacttgttggaggagtgcagccacccagcgtctcaagcagttctgggcttactggagaa
gggcaaccacccaatgtctcaagtagctctggacttgcagggggagtacagccacccagt
gtttcaagcagctctggacttgtaggaggagtgcaaccaccaactgtttcaagcagttct
ggtctcgcaggaggagtgcagctacctactgtctccagtagctcttctcttgctggcgga
gttcagccaaccagcgtctcgagtagccctggacttatggctggagtgcaaccaccaagt
gtctcaagtagctcagggcttctagctggagtgcatccacccagtgtctccagcagccct
ggccttctgacaggaatgcagccacccaatgtctcaagcagctcaggagttctggcagga
atacagccaccaagtgtctcaagcaactctgggcttctcataatgccaccacccaacgtt
tcaagtagttctggacttatgggagttccaccaccaaatatttcaaatagttccggactt
ctggcaatgcagcatccagctggggttcaaaacatgcctcatttaaatattagtagtcaa
aggatgccgggaatgcctctcatagatatccgtccaggcttaatgccccattcgcctgga
ccaaggtttccattaatgcagccaggaatgccaccgcagcgtagtattcctccaccagca
atccttgatccatctcttcacccaccacctcgaggtccttttcctccaggagatattttt
aatcaaccagaaagaccttttggaacaccaggaagacaaaatattgatagcatttctaat
ccagagaaaagactaccacttggaggtgataatattcagcaggaaggagacagagattat
cgctttcctccagtggaaaaccgagataatcttaacagaccatctccagtggatgtcaga
gattctgttggacgaccaccagttgatccaagagaggctataggaaggcctccggtagat
ggaagagaacactttgcaagaccacatgtagacatgagagaaaattttggaagaccaggt
atagataaccttggtcgaagagagcattttggtttcaattcagacaagcactggggacaa
agaggagactatgatgaaagagagcaccatgccttccctatttatggtggcccgaaaggc
ttccatgaagacagagagaggtttcggcatgtaaactataggtttgatagtagaagtggt
cccaattggaacagaggatttgaacaagatgctcacagagattttgatgaccgcagaaga
ccctgggaaagacagagggatagggatgacagagattttaatttttgcagagaaattaat
gggaacaggtttggaagagacagaatgtcaaacaactggatcccccctccacatccacgg
gtttttgaatattttgatggggccacttcccaacgcaaagccgataatatgccccaggta
aacggtgaaaatacagagacagaaagtcagccaccaactgcgcaggtgcaggacgatcca
gaactttatgaaaaactgacatcttccgtcgagataaacaaagagaagagtgacacagaa
gctgatatagaaagtgaaccagtggtagaaagcacagaaactgaggggacataa
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