Larus michahellis (yellow-legged gull): 141740954
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Entry
141740954 CDS
T11135
Symbol
RTCB
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
lmic Larus michahellis (yellow-legged gull)
Brite
KEGG Orthology (KO) [BR:
lmic00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
lmic03016
]
141740954 (RTCB)
Enzymes [BR:
lmic01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
141740954 (RTCB)
Transfer RNA biogenesis [BR:
lmic03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
141740954 (RTCB)
Prokaryotic type
tRNA splicing ligases
141740954 (RTCB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
141740954
NCBI-ProteinID:
XP_074436660
LinkDB
All DBs
Position
1:59382883..59394676
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AA seq
505 aa
AA seq
DB search
MSRSYNDELQYLDKIDKNCWRIKKGFVPNMHVEGVFYVNDPLEKLMFEELRNACRGGGAG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDPEAVVSPGGVGFDI
NCGVRLLRTNLDENDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSSRAKKRGLPQLGTLGAGNHYAEIQVVDDIYNE
YAARKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIAS
TEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDMHVIYDVSHNIAKVEQ
HVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHAAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagccgcagctacaacgatgagctgcagtacctggacaagatcgacaagaactgctgg
cggatcaagaagggcttcgtgcccaacatgcatgtggaaggcgttttctacgtgaacgac
cccctggagaagctgatgttcgaggagctgcgcaatgcctgccgcggcggaggtgcaggt
ggctttttgcctgctatgaaacagattggaaatgtggctgcattacctggcattgttcat
agatcaataggccttccagatgtccattctggttatgggtttgccattggcaacatggct
gcctttgatatgaatgatcctgaagcagtggtgtcaccaggtggtgtcggatttgacatc
aactgtggtgtccgcttactgcgtacaaatttggatgaaaatgatgtgcagcctgtgaag
gagcagcttgcccaggctatgtttgaccacattcctgttggtgtcggctccaaaggtgtc
atccccatgaatgccaaggatttggaagaggcactagagatgggtgtggactggtctctc
cgggaaggctatgcctgggcagaggacaaggagcactgtgaggaatatggaagaatgctg
caggctgaccccaacaaggtctcctcaagagcaaagaagaggggcctgcctcagctggga
accctgggagccggaaatcattacgccgagatccaggtcgtggatgacatttacaacgaa
tatgctgccaggaagatgggcatcgaccacaaagggcaggtgtgcgtgatgatccacagt
ggcagcagaggcctgggccaccaggttgccacagatgcattggtggctatggaaaaggct
atgaaacgggacaaaatcatagtgaatgatcgccagctggcatgtgccaggattgcctcc
acagagggacaggattacttgaagggaatggcagctgctggaaactatgcatgggtcaac
cgctcttctatgacttttctaacaagacaggcctttgccaaagtcttcaacacaacccca
gatgaccttgatatgcatgttatctatgatgtgtctcacaacattgccaaagtggagcaa
catgtagtggatggaaaggagcggactctgctggtgcacagaaagggatcaaccagggcc
ttccctcctcaccatcctcttattgctgttgattatcaactgactggacaacctgttttg
attggagggaccatgggcacctgtagctatgttcttactggcacggagcaaggcatgact
gagacctttggaactacctgccatggagctggtcgtgcgctgtctcgagccaaatctcga
cgtaacttggacttccaggatgtattggacaagctggctgacatgggcattgctatccgt
gttgcttcgcccaaactggtcatggaagaagcaccagagtcttataagaacgtgacagat
gtggttaacacctgccacgcagctggcatcagcaagaaagccattaaactgcgacctatt
gctgttataaaaggctag
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