Larus michahellis (yellow-legged gull): 141743001
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Entry
141743001 CDS
T11135
Symbol
IGHMBP2
Name
(RefSeq) DNA-binding protein SMUBP-2
KO
K19036
ATP-dependent RNA/DNA helicase IGHMBP2 [EC:
5.6.2.5
5.6.2.3
]
Organism
lmic Larus michahellis (yellow-legged gull)
Brite
KEGG Orthology (KO) [BR:
lmic00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
lmic03009
]
141743001 (IGHMBP2)
03012 Translation factors [BR:
lmic03012
]
141743001 (IGHMBP2)
Enzymes [BR:
lmic01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
141743001 (IGHMBP2)
5.6.2.5 RNA 5'-3' helicase
141743001 (IGHMBP2)
Ribosome biogenesis [BR:
lmic03009
]
Eukaryotic type
Other ribosome biogenesis factors
141743001 (IGHMBP2)
Translation factors [BR:
lmic03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
141743001 (IGHMBP2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
SMUBP-2_HCS1_1B
R3H
AAA_30
AAA_19
zf-AN1
Viral_helicase1
Helicase_RecD
ResIII
DEAD
nSTAND3
AAA_16
AAA_22
Flavi_DEAD
SLFN-g3_helicase
AAA_25
UvrD-helicase
IstB_IS21
AAA
T2SSE
ABC_tran
DAP3
RL
DnaB_C
UvrD_C_2
PhoH
Herpes_ori_bp
AAA_33
Motif
Other DBs
NCBI-GeneID:
141743001
NCBI-ProteinID:
XP_074442764
LinkDB
All DBs
Position
4:94121943..94167381
Genome browser
AA seq
986 aa
AA seq
DB search
MAAEAAERHLELLREEREAELAQSRAWQESVSLKELQRRGVCLLKLQAANQRTGLYGRLL
VTFQPRKYDSDAELPCNSFGPGDIVGLYETAGQGDPLSTGIVTRVTSKAVTVAFEESRDG
MLSLDRESSYRLLKLANDVTYNRLKKALNALKQYHSGPASALIDVLFFSSEPSAFSETKP
LKLYNESLDASQREAVSFSLAQRELAIVHGPPGTGKTTTLVEIILQAVQQGLKVLCCAPS
NVAVDNLVERLAGYKARILRLGHPARLLEPIQQHSLDAVLARGDNAQIVADIRKDIDQAF
AKSKKAQDRGERSHFLGEIKALRKELKEREESAMAAALTHASVVLATNTGASSDGPLKLL
PEDHFDLVVIDECAQALEAGCWVPLLRAPKCVLAGDHKQLPPTILSHKAAAKGLALSLME
RLIERYGEQIVKMLTVQYRMHQAIMQWASSEMYSGRLTAHPSVAQHLLRDLPGVTSTEET
TVPLLLIDTAGCGLFELEVEDEQSKGNPGEVQLAALHIQALVEAGVKAQDIAVVAPYNLQ
VDMLREHLCHRYPELEIKSVDGFQGREKEAVILSFVRSNRKGEVGFLAEDRRINVAVTRA
RRHVAVICDTRTVSNQAFLKRLVDYFSQHGEVRTAFEYLDNLVPENYAQESRSERQQGAK
LAAASGLKTQPPPGRKLKAAATKPECQKAEARFSPNTSGPGRERPGTKDGADRFKATLVA
FLESSETQLDFPPSLNSHDRMLVHLMAEEYGLQHLSTGEGRDRYISVRKKEPAEPSLPAA
APPGKQLPLPQPQHPHRETPVPAEPEGRSEGSGKVDLKTLHLERVQREKARREEAARKAQ
EPSAGLQGSSRKKDKSQAKGKPAVKSGADGVAEEDIDALISAAIKADNTCGFPRCKASVT
TLGQLCLHCNRRYCLSHHIPEVHGCGEKAKAQARQRISREGVLYPGSGSKDKSLDAARRA
QLQRRLDKKLSELTSQRKSKKKDKEK
NT seq
2961 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggaggcggcggagcggcacctggagctgctgcgggaggagcgggaggccgag
ctcgcccagagcagggcatggcaggaaagcgtctccctgaaggaactgcagcgcagaggc
gtctgcttgctgaaactccaggctgccaaccagagaaccggcctctacggacggctgctc
gtcacctttcagcctagaaaatacgattcagatgccgagctgccctgtaacagttttggg
cctggggacattgtgggcctctatgagacagctggccagggtgacccgctctccaccggc
attgtaacacgggtcacctccaaagccgtgactgtagcctttgaggaatctcgagatggc
atgctgagcttggaccgagagagctcttaccgcctgctgaaattagccaacgatgtcacc
tacaacaggctgaaaaaagctttaaatgcactaaagcagtatcacagcggtccagcctct
gctctgatcgacgtcctcttcttttcttctgagccgagcgcattcagtgaaacaaagcct
ctaaagctttacaatgagtcgctggatgcatcgcagagggaggccgtctccttctcactg
gcgcagagggagcttgccatcgtccatggaccacctggcacagggaagaccacaacacta
gtggagatcatcttgcaagctgtacagcaaggcctgaaagtcctgtgttgtgccccttcc
aacgttgctgtggacaacctggtggaaaggctggctggctacaaagcccgcatcctgcgg
ctcgggcaccctgctcgcctgctggagcccatccagcagcattccttggatgccgtcttg
gcccgtggtgacaatgcccagatagtggcggatatcaggaaggacatcgaccaggccttt
gcaaaatccaaaaaggctcaagacaggggagagcggagccactttctcggtgagattaag
gcgctgagaaaggagctgaaagaacgagaagaaagtgccatggctgcagccctcacccat
gccagtgttgtccttgctactaatacaggtgcttcctccgacggcccactgaagctgctt
cctgaagatcactttgacctggtggtgatagacgagtgcgcgcaggcgctggaagccggc
tgctgggtgcctctgctgagggctcccaagtgcgtcctggccggggatcacaagcagctt
ccccccaccatcctctctcacaaggctgctgccaagggccttgcgctcagcctgatggag
cgcctcatcgagaggtacggggagcagatcgtgaagatgctgacggtgcagtaccgaatg
caccaggccatcatgcagtgggcttcctcggagatgtacagcggccggctcactgctcac
ccgtcagtggcccagcatttgctcagggacctgccgggcgtcacctctacagaagagact
acagttcccctgttgcttatagacactgctggctgcggcctgtttgagctggaagtggaa
gatgaacagtctaaggggaatccaggcgaggtgcagctggccgctctgcacatccaagcc
ttggtggaagccggtgtgaaggcacaagacatcgctgttgtagccccctacaacctgcag
gtggacatgctaagagagcacctgtgccacaggtacccagagctggaaattaaatcagtt
gatggtttccaaggaagagagaaagaggcagtgatcctgtccttcgtgagatccaacagg
aaaggtgaggtgggcttccttgcagaagaccggcggataaacgtagcggtgacccgcgcc
cggcgccacgtggctgtcatctgcgacacccgcaccgtcagcaaccaggcctttctgaag
cggctggtggattatttcagccagcacggggaggtacgcaccgccttcgagtacctcgac
aacctcgtgcccgaaaactacgctcaggagagccgcagcgagcggcagcagggtgcaaag
ctcgccgcagcatctggcctcaaaacgcagccgcctccggggaggaaactcaaagcagca
gcaaccaaaccagagtgtcagaaggcagaagcgcgtttctccccaaacacgagcggacct
gggagagagcgcccagggacaaaagacggtgccgacagattcaaggccacgctggtggcc
ttcctggagagcagcgagacgcagttggatttccccccatccctcaattctcacgatcgg
atgctggttcacctgatggcggaggagtacgggctgcagcacctgagcaccggggaaggg
agggaccggtacatcagcgttcgcaagaaagagcctgccgagccttcgctccccgccgcc
gccccccccggcaagcagctcccccttcctcagccgcagcatccccacagggaaactccc
gtccccgctgagcccgaaggacgcagcgagggctcagggaaagtggacctgaaaaccctg
cacctggagagagttcagagggagaaagccagacgggaggaggcagcgaggaaggctcag
gagcccagtgccggcctccagggcagcagcaggaaaaaagacaaaagccaagccaaagga
aagccagcggttaagagcggagcagacggcgtggcagaagaagatatcgatgctctgatt
tctgctgccattaaagctgacaacacctgcggcttcccccgttgcaaagccagcgttaca
accctgggacagctttgcctccactgcaacaggcgctactgcctcagccatcacatcccg
gaggttcacggctgcggggagaaggcgaaggcccaggcgcggcagaggatcagccgggaa
ggggttctctatcccgggagcggctccaaagacaagtccctggacgccgccaggagagcc
cagctccagcggcgcctggacaagaagctcagcgaactcaccagccagagaaagagcaaa
aagaaagacaaggagaaatga
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