Larus michahellis (yellow-legged gull): 141743400
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Entry
141743400 CDS
T11135
Symbol
HTT
Name
(RefSeq) huntingtin isoform X1
KO
K04533
huntingtin
Organism
lmic Larus michahellis (yellow-legged gull)
Brite
KEGG Orthology (KO) [BR:
lmic00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lmic03019
]
141743400 (HTT)
04131 Membrane trafficking [BR:
lmic04131
]
141743400 (HTT)
03029 Mitochondrial biogenesis [BR:
lmic03029
]
141743400 (HTT)
Messenger RNA biogenesis [BR:
lmic03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
141743400 (HTT)
Membrane trafficking [BR:
lmic04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
141743400 (HTT)
Mitochondrial biogenesis [BR:
lmic03029
]
Mitochondrial quality control factors
Regulator of mitochondrial biogenesis
Other regulator of mitochondrial biogenesis
141743400 (HTT)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Htt_C-HEAT
Htt_N-HEAT
Htt_bridge
Htt_N-HEAT_1
HEAT
HEAT_EF3_N
Rad26-like_helical_rpts
Motif
Other DBs
NCBI-GeneID:
141743400
NCBI-ProteinID:
XP_074443558
LinkDB
All DBs
Position
5:55944791..56029697
Genome browser
AA seq
3096 aa
AA seq
DB search
MATMEKLMKAFESLRSFQQQQGPAAISEEPLQRPKKELSATKKDRVNHCLTICENIVAQS
LRNSPEFQKLLGIAMELFLLCSEDAESDVRMVADECLNKVIKALMDSNLPRLQLELYKEI
KKNGASRSLRAALWRFAELAHLVRPQKCRPYLVNLLPCLTRISKRPEESVQETLAAAIPK
IMAAFGNFANDNEIKVLLKAFIANLKSSSPTIRRTAAGSAVSICQHSRRMQYFYAWLLNV
LLGLLVPVEDDHPTLLILGVLLTLRYLIPLLQQQVKDTSLKGSFGVTRKETEISPSPEQL
IQVYELTLHYTQHQDHNVVTGALELLQQLFRTPPPELLHALTASGGIAQVSVSKDESASR
SRSGSIVELIAGGGSSCSPVLARKHKGKILLGEEEGLEDDSETRSDVSASSFAASVKGEI
TSELASSSGVSTAGSVGSSAADSTGHDIITEQPRSQHTLQSDSVDLTSCDLTSTATEGEE
DDVLSRSSSQISAVQSDPTMDLNDGTQASSPISDSSQTTTEGPDSAVTPSDSSEIVLEGA
EGQYSGMQIGQLQDEEDEATNILQDDSSESFRNSSIALQQPHLLKTMSHSRQPSDSSVDR
FTSKEDAADPGDHENKPSRVKGDIGHYTDGNSAPLVHCVRLLSASFLLTGEKGALVPDRD
VRVSVKALAVSCVGAAVALHPESFFSKLYKTPLEAMGEEYEEQYVSDILNYIDHGDPQIR
GATAILCGTIVNSILIKSRFDVEKWLIYVRSSTGNLFSLVDCIPLLQKTLKDESSVTCKL
ACTAVRHCIMSLCSSSYSELGLQLIVDLLTLKNSSYWLVRTELLETLAEVDFRLVSFLEG
RTYSLHRGVHHYTGLLKLQERVLNDVVICLLGDEDPRVRHVAAASLVRLVPKLFYNCDQG
QADPVVAVARDQSSVYLKLLMHETQPPSHFAVSTITRTYRGYNMLQSPTDVTMENNLSRV
IAAISHALTISTTRALTFGCCEALCLLSTTFPVCTWSMGWHCGVSQPSPSDEAQKGCTIG
MAGMVLSLLSSAWFPLDLSAHQDALILTGNLLAASAPKCLKNPWSAEEDSNQGAAKQEEP
WPALADRTLVTLVEQLFSHLLKVINICAHVMDDVAPGPAVKAALPSLTNPPSLSPIRRKG
KERESIEQASVPMSPKKGGETSPATRQTDSTGPAPTSKSSSVGSFYHLPSYLKLYDVLKA
THANYKVTLDLQNSNEKFGSFLRSALDVLSQILEFATLQDIGKCVEEILGYLKSCFSREP
TMATVCVQQLLKTLFGTNLASQYDGLSSNPNKAQGKAQRLGSSSLRPGLYHYCFMAPYTH
FTQALADASLRNMVQAEQEHDASGWFDVLQKVSTQLKTNITSAAKHRADKNAIHNHIRLF
EPLVIKALKQYTTTTSVQLQRQVLDLLAQLVQLRVNYCLLDSDQVFIGFVLKQFEYIEVG
QFRESEAIIPNIFFFLVLLSYERYHSKQIIGIPKIIQLCDGIMASGRKAVTHAIPALQPI
VHDLFVLRGANKADAGKELETQKEVVVSMLLRLIQYHQVLEMFILVLQQCHKENEDKWKR
LSRQIADIILPMLAKQQMHIDSHDALGVLNTLFEILAPSSLRPVDMLLRSMFVTPKTMAS
VSTVQLWISGILAILRVLISQSTEDIVLSRIQELSFSPYLISCQAINRLRRGENNLSAPE
DRTEVKQAKYLPEETFSRFLLQLVGILLEDIVTKQLKVDMNEQQHTFYCQELGTLLMCLI
HIFKSGMFRRITAAATRLFTGDGSDGSFYTLESLSELVQSMIPTHPSLVLLWCQILLLVN
YTNYNWWSEVHQTPKRHSLSTTKLLSPQISGDSDESDSESKRGVCNREIVRRGALILFCD
YVCQNLHDSEHLTWLIVNHVQDLINLSHEPPVQDFISAVHRNSAASGLFIQAIQSRCENL
AAPTTLKKTLQCLEGIHLSQSGAVLTLYVDKLLCTPFRVLARMVDTLACRRVEMLLAATL
QNSITQLPVEELDRIQEYLQNSGLATRHQRLYSLLDRFRLMVAPDTTSPSPLVTSHPLDG
EDQPALENVILDKDWYVSLVRSQCCIKSDSALLEGAELVNRIPQPDLNSFMTSKEFNLSL
LAPCLSLGMNEISRDQKSSFFETARRVTLDHVSTAVQNLPASHQVFQPLLPPEPSAYWKK
LSDIFGDEVMYQSMMTLCRALAQYLLLLSKLPAGLRVPPDKEDDILKFVVMSVEALSWRL
MHDQIPLSIDLQAALDCCCLTLQQSSLWNLLASAVNVTYACSLINCVRFIIEAVAVEPGN
QLLSPERKKNTSKGLSEGEVDSNSQKTKHITAACEIVAEMVECLQTVLSLGHKRNSSIPA
FLTPVLKNIIISLARLPLVNSYTRVPPLVWKLGWSPKPAGDFGTVFPEIPVEFLQEKEIF
KEFIYRINILGWISRTQFEETWATLLGVLVTQPIVMDQEENQQEEDTERTQINVLAVQAI
TSLVLSAMTIPVAGNPAVSCLEQQPRNKALKALDTRFGRKLSVVRGIVEQEIQAMVSKRD
NIATHHLYQAWDPVPSLSPATTGALISHEKLLLQINTEREIGDMDYKLGQVSIHSIWLGN
NITPLREEEWGEDEEDENDIPAPSSPPTSPINTRKHRAGVDIHSCSQFLLELYSQWILPS
NPNKRTPVILISEVVRSLLAVSDLFTERNQFEMMYTTLTELRKVHPSEDEILIQYLIPAT
CKAAAVLGMDKAVAEPVSRLLESTLRSTHMPSRIGALHGILYILECDLLDDTAKQLIPII
SEYLLSNLRGVAHCVNIHNQQHILVMCATAFYLIENYPLDVGPEFSAGIIQMCGVMVSGS
DESTPSIIYHCVLRGLERLLLSEQLSRLDSESLVKLSVDRVNVQSPHRAMAALGLMLTCM
YTGKEKISPSRTTDANPAAPDSESVIVAMERVSVLFDRIRKGFPFEARVVARILPQFLDD
FFPPQDVMNKVIGEFLSNQQPYPQFMATVVYKVFQTLHSTGQSSMVRDWVMLSLSNFTQR
TPVAMAMWSLSCFFVSASTSQWISAILPHIISRMGKSEQVDVNIFCLVAIDFYRHQIDEE
LDRRAFQSVFEVVASPGTPYHRLLTCLQNVHKVAAC
NT seq
9291 nt
NT seq
+upstream
nt +downstream
nt
atggccaccatggagaagctgatgaaggccttcgagtcgttgcgctccttccagcagcag
cagggtccggctgccatctccgaggagccactccagagaccaaagaaagaactttcagct
accaagaaagatcgagtgaatcattgcctaacaatatgtgaaaacatagttgctcagtct
ttaagaaattctccagaatttcagaaactgcttgggattgctatggaactctttctcctc
tgcagtgaggatgcagaatctgatgtccggatggttgccgatgaatgccttaataaagtt
attaaagctttgatggattccaatcttcctaggttacaattagaactgtataaagagatt
aaaaagaatggtgcttccagaagtctacgtgctgcactgtggagatttgctgagcttgcc
catctagttcggcctcaaaagtgcaggccatacttagtgaaccttttgccctgtctaaca
cgaataagtaagagaccagaagaatcggtacaagagactctagctgcggcaataccaaaa
atcatggcagcatttggcaattttgcaaatgacaatgagattaaggttttattgaaagct
ttcatagctaatcttaaatccagttcacctactatccgtcgaacagcagcaggatcagca
gtaagcatctgtcaacattcacgaagaatgcagtatttttatgcctggttattgaatgta
cttttaggcttgctggttcctgtagaagatgatcatcctactcttttaattctgggtgtt
ttgcttacactaaggtatctcatacctttattgcaacaacaagtaaaggataccagcctg
aaaggcagttttggagtaacaagaaaagaaacagagatttcaccttcaccagaacaactt
atacaggtttatgaattgactctgcattacacccagcatcaggaccataatgttgtgact
ggagctttagaattattacaacagctctttagaacgccaccacctgaacttctccatgcc
ctgaccgcttcagggggcattgcacaggtcagtgtatccaaagatgaatctgccagcagg
agccgcagtgggagcatagtggaacttatagctggaggggggtcttcatgcagccctgtt
cttgcaagaaagcataaaggtaaaatacttcttggtgaagaagaaggtttggaggatgat
tctgaaacccgatcagatgtcagcgcttcatcgtttgcagcttctgtgaagggtgagata
accagtgaattagcttcttcatcaggggtatcgacagctgggtcagtagggagttcagct
gctgattctactggacatgatatcattactgagcagccacgttctcaacatacattgcag
tcagactctgtagacctgacaagctgtgatttgacaagtacagctactgaaggggaagaa
gatgatgtgcttagtagaagttccagccagatcagtgctgtccagtcagatcccactatg
gacttgaatgatggtacccaggcttcctcaccaattagtgacagctcgcagactactaca
gaaggtccagactctgctgtaaccccttcggacagttctgaaattgttctggagggtgct
gaaggacagtattctggaatgcaaatcgggcagctgcaggatgaggaagatgaggctaca
aatattctccaggatgattcatcagagtctttcagaaattcttctattgctcttcaacag
cctcacctgttgaaaactatgagccatagtaggcagccttctgatagcagcgtagataga
tttacatcaaaagaagatgcagcagatcctggtgatcatgaaaataagccctccagggta
aagggagacataggtcactatactgatggaaattctgctcctttagtgcactgcgttaga
cttctgtcagcctcttttctactcactggggagaaaggagctttagttcctgatagagat
gtgagagtcagtgtaaaagctctggcagtaagttgtgttggagcagctgttgctcttcac
cctgagtctttcttcagcaaactgtacaaaacgccccttgaagcaatgggagaagagtat
gaggagcagtatgtatcggatattctgaactacattgaccatggagatccccagattaga
ggagctactgccattctgtgtggaacaattgtcaactccattctaattaaatcccgcttt
gatgtggaaaaatggctaatatatgtcagaagctcaacaggaaatctcttttccttggta
gactgcatacctctgctacagaaaacgctgaaagatgagtcctctgttacatgcaaactg
gcttgtacagctgtgaggcattgcatcatgagcttatgtagtagcagttacagtgaacta
ggtttacaattaattgttgacctccttacgctgaagaatagctcatattggctagtaagg
acagaacttctggagacacttgcagaggtagattttcggctagtaagcttcttggaagga
agaacttatagcttgcacagaggtgttcatcattatactggtctactaaaacttcaggag
agagtgcttaatgatgttgtaatatgcctgcttggagatgaggatccaagagtaagacat
gtagctgcagcttcattagtgaggcttgttccaaagctgttttataactgtgatcaagga
caggctgatccagttgtggcagtagcaagagaccaaagcagtgtctacctgaaactacta
atgcatgaaacacagcctccatctcactttgcggtgagcactatcaccagaacatacaga
ggttacaacatgctgcaaagtccaacagatgtcactatggaaaacaatctctcaagggtt
attgcagcaatttcccatgcattgacaatatccactacaagagcacttacgtttggctgc
tgtgaagctttgtgtcttctctccacaacatttccagtctgcacctggagcatggggtgg
cactgtggtgtttcccagccaagtccttcagatgaagctcagaaaggctgcaccattgga
atggccggcatggtcctgtctctcctttcatcagcatggttcccactggacctctctgcg
catcaggatgctttgattttgactggaaacttgcttgcagcaagtgctcccaagtgctta
aagaatccctggagtgctgaagaagattcaaatcaaggtgccgcaaagcaggaggaaccc
tggccggctctggcagatcgaactcttgttactttagtagaacagctcttttctcatctg
ctgaaggtcattaatatttgtgcacatgtaatggatgatgttgctcctggcccagcagta
aaggcagcgttaccttctctcacaaacccaccttctcttagtccaattcggaggaagggg
aaagagagggaatctatcgaacaggcatctgtgccaatgagccctaaaaagggtggtgaa
acgagtccagctactaggcaaactgattccactgggcctgctccaacaagtaaatcatct
tcagtaggaagcttttaccatcttccgtcatatctgaagttatatgatgtcttgaaagca
acccatgctaattataaggttactttggatctccagaacagcaatgaaaagtttggaagt
ttcttacgatctgccttagatgttctgtctcaaatcttggaatttgctacacttcaagac
attggaaagtgtgtagaagaaattttgggatacctaaaatcatgtttcagcagagaacca
acaatggcaacagtttgtgtacagcagttattgaaaacattgtttgggacaaatctggct
tctcagtacgatggcttgtcttcaaaccccaacaaggctcaaggcaaagctcaacgttta
ggttcttccagtttgagacctggtctctatcattattgcttcatggcaccatacacacac
tttacacaggcccttgctgatgctagtctaaggaacatggtccaggctgagcaggaacac
gatgcttcaggatggtttgatgtgctgcaaaaagtttctacacagctgaaaactaacatt
accagtgcagcaaaacatcgtgctgataagaatgctattcacaatcacattcgtttattt
gaaccccttgtcataaaagcattgaagcaatatactacaacaacatcggtacagctgcag
agacaagttctagacttgcttgctcaactggttcagctacgagttaactactgtcttctg
gattcggatcaggtgtttattggatttgtgctaaagcagtttgaatacattgaagtagga
cagttcagggagtctgaagcaattattcctaacatcttttttttcctggtgttgctgtct
tatgagcggtatcattccaaacagataatcggaattcccaagatcattcagctgtgtgat
ggtatcatggccagtgggaggaaagctgttacacacgcaataccagctctgcaacctatt
gttcacgatctctttgtgttaagaggagcaaataaagctgatgctggaaaagagttggaa
acacaaaaggaggtggtagtgtcaatgttgctgagacttattcagtatcatcaggtgcta
gaaatgttcatcttagtattgcaacagtgtcataaagaaaatgaagacaaatggaaaaga
ttgtcccggcaaatagctgatattattctcccaatgcttgcaaaacaacagatgcatata
gactctcatgatgctctaggagtattgaacactttgtttgaaattttggctccttcatcg
cttcgccctgtggacatgcttttaaggagtatgtttgttactcctaaaacaatggcatca
gtgagcactgttcagctatggatttctggaattttagctatccttagagttctgatttca
cagtcaacagaagacatcgttctgtcccgtatacaagagctttccttctcaccgtatttg
atttcatgtcaagcaattaacagactgagacgtggagaaaataacttatccgcaccagag
gatcgcactgaggttaaacaggctaaatatctgcctgaagagacattttctaggttctta
ttacaactggttggcattctactggaagatattgttaccaaacaattgaaagtggacatg
aatgagcagcaacatactttctactgccaggagctgggcacgctgcttatgtgtttaata
catatcttcaaatcagggatgtttagaagaatcacagctgcagccaccagactttttaca
ggagatggatctgatggtagtttctatacccttgaaagtttgagcgaacttgttcaatcc
atgattcccacgcatccttcgttagttcttctctggtgtcaaatcctgcttcttgtcaat
tataccaactacaattggtggtcagaagtgcatcaaaccccaaagagacacagtctttct
actactaagttgctgagccctcagatatctggagacagtgatgaatcggattcagaatct
aaacgtggcgtgtgcaatcgagagatagtgagaagaggagctctcattcttttttgtgac
tatgtttgtcaaaacctgcatgattcagaacacttgacctggcttattgtgaatcatgtt
caagacttgattaatctgtcccatgagcctccagtacaagactttattagtgctgttcac
aggaattcagcagcgagtggtctcttcatccaggccattcaatcacggtgtgagaatctt
gcagctcccacaactctgaagaagactttacagtgcctagagggaatacatctcagccag
tctggggctgtcctaacgttatatgttgataaacttttgtgtactccgttccgtgtactt
gctcgcatggttgacacgctggcttgccgtcgggtagaaatgcttttggctgcaacttta
cagaacagcattactcagttaccagttgaagaactggatagaattcaggaataccttcaa
aacagtggattagcaacaagacaccaaagactttactcgctcttggataggtttcgtctt
atggtagcaccggacacaactagtccttcacctctggttacttcacacccactagatgga
gaagaccaaccagctttagagaatgtaattctagacaaagactggtatgtgtcactagtg
aggtcacagtgttgcatcaagtctgactcggcactgttagaaggcgcagagctggtaaat
aggattcctcagcccgacctgaactccttcatgaccagcaaggaattcaacctaagcttg
ttagcaccttgtttaagccttggcatgaatgaaatctcaagagaccagaaaagtagcttc
tttgaaacagctcggagggtaactctggatcatgtatctactgctgtacaaaaccttcct
gccagccatcaggtttttcaaccgctattgccacctgagccatcagcctactggaaaaaa
ctaagcgatatctttggagatgaggtgatgtatcagtctatgatgacactttgtcgtgca
ctggctcagtatttattgttactctcaaaactaccagctggtctccgtgttcctcctgac
aaagaggatgatatcctgaagttcgtagttatgtcagtagaggcactatcatggcgttta
atgcacgaccagattccattaagtatagatctccaagctgctctggattgttgctgtctg
acattacagcagtctagtctctggaatttgctggcttctgcagttaatgtgacatatgct
tgctccttaattaattgcgttagatttatcatagaagcagttgcagttgaacctggtaat
caactacttagtcctgaaagaaagaagaatacttcaaaaggcttaagtgagggtgaagtt
gattcaaactcacagaaaactaaacacattactgcagcttgtgaaatcgtagctgagatg
gtggaatgcttacagactgtcttgtcactggggcacaaaagaaacagcagtattccggca
tttcttactcctgtcctcaagaacatcatcatcagtttagcaaggctgcctctagtgaac
agttacaccagagtacctcctttggtctggaaattaggctggtcaccaaagcctgcaggt
gacttcggcacagtttttcctgaaatcccagtagaatttcttcaagaaaaagaaatcttt
aaggagttcatctatcgcattaatatacttggttggatcagccgtactcagtttgaagag
acttgggctactttgcttggtgtgcttgtaactcagcctattgtaatggaccaagaggag
aaccaacaagaggaagatacagagaggacccaaattaatgttcttgcagtacaagccata
acttccttggtgctgagtgcaatgacgatacctgttgcaggcaatccagcagttagctgt
ttggaacagcagccccgcaacaaagctttaaaagctctggacacaaggtttgggaggaag
ctaagtgttgtcaggggaattgttgaacaggagatccaagcaatggtatctaagagagat
aatattgctactcatcacttataccaagcttgggaccctgttccgtcactttctccagct
actacaggtgctcttatcagccatgaaaaactcttactgcagatcaatactgaacgagaa
ataggagatatggattataaactgggacaggtctctatacactccatatggttaggaaat
aatatcactccattgagagaagaagagtggggtgaggatgaagaagatgagaatgacata
cctgctccttcctcaccaccaacctctcctattaacaccaggaaacaccgtgctggtgta
gatatacattcttgttctcagttcttgcttgaactgtatagtcagtggatattgccatca
aaccctaacaagagaacgccagtcattttgattagcgaagtggtgcgatcacttctggcg
gtgtcagacttgtttacagaaaggaatcagtttgagatgatgtatacaacattgacagaa
ttgcgaaaggtgcatccatcagaagatgagattcttatacagtatttgataccagccact
tgtaaagctgctgctgttcttggaatggataaagctgtggctgaaccagtaagtcgactg
ctggaatcaaccctaagaagcacccatatgccaagtcggattggagctctacatggaatt
ctttacatccttgagtgtgacttgcttgatgacacagcgaagcaactcattccaattatc
agcgagtatctgctctccaatttgagaggagtagcacattgtgtgaatatccataaccaa
cagcacatcttggtaatgtgtgcaactgctttctatttgattgagaattacccacttgat
gtagggcctgaattctctgcaggaattatacagatgtgtggcgtcatggtgtctggaagt
gatgaatcaacgccatccattatttatcattgtgtcctgagaggattagaacgactcctt
ctttcagagcaactttcgaggctggatagtgaatcgctagttaaactgagtgttgacaga
gtgaatgtgcagagcccccacagagcaatggcagcgcttggattaatgctgacttgcatg
tacacaggaaaggaaaaaatcagccccagtcgtaccacagatgcaaatcctgctgctccc
gacagtgaatctgtgatcgtagctatggaacgagtatctgtcctttttgataggatcagg
aagggctttccttttgaagctagagtagtggctcggattcttccacagttccttgatgat
tttttccccccacaagacgtaatgaataaagttattggagaatttttatccaatcagcaa
ccttacccgcaattcatggcaacagtagtttataaggtatttcagacactacatagcact
ggacagtcctcaatggtccgtgactgggtgatgctgtctctctctaatttcacacaaaga
acacctgttgcaatggcaatgtggagtctttcctgtttttttgtcagtgcttcgaccagt
caatggatttcagcaattcttccacatattatcagcagaatgggcaaatctgagcaagtg
gatgttaacatcttctgtttggtggccatagacttctaccgacatcagatagatgaagaa
ttagatcggagggcctttcagtcggtgtttgaggtggtggcatctccaggaaccccatat
catcgcctactaacttgtttgcaaaacgtccacaaggtcgcagcatgttga
DBGET
integrated database retrieval system
