Larus michahellis (yellow-legged gull): 141744873
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Entry
141744873 CDS
T11135
Symbol
COL4A3
Name
(RefSeq) collagen alpha-3(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
lmic Larus michahellis (yellow-legged gull)
Pathway
lmic04382
Cornified envelope formation
lmic04510
Focal adhesion
lmic04512
ECM-receptor interaction
lmic04518
Integrin signaling
lmic04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
lmic00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
141744873 (COL4A3)
04518 Integrin signaling
141744873 (COL4A3)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
141744873 (COL4A3)
09142 Cell motility
04820 Cytoskeleton in muscle cells
141744873 (COL4A3)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
141744873 (COL4A3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lmic04147
]
141744873 (COL4A3)
00536 Glycosaminoglycan binding proteins [BR:
lmic00536
]
141744873 (COL4A3)
Exosome [BR:
lmic04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
141744873 (COL4A3)
Glycosaminoglycan binding proteins [BR:
lmic00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
141744873 (COL4A3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
141744873
NCBI-ProteinID:
XP_074447800
LinkDB
All DBs
Position
6:23305853..23371767
Genome browser
AA seq
1671 aa
AA seq
DB search
MAGRGCPSRLAPLLLLALLWPGRAAGAESCVCKGKSPCFCDSMKGNKGEKGFPGAPGPPG
LRGFPGPEGPPGPQGPKGSPGLTGLVGPKGIRGLPGLPGFSGPPGLPGEPGTVGPPGRSG
VPGCNGTKGDQGFPGPPGRRGAPGIPGIPGIKGEKGCPAEVYNQGYGAKGDPGLPGMPGL
QGAQGAQGYPGELGPQGPPGPSGMPGKAGPPGPKGLMGLKVIGTKGRKGDTGLTGPPGPP
GTVIVTLSGPDNMTDLKGEKGEKGSRGLPGPVGFTGPDGDSQSEKGDQGEPGAQGKPGKD
GAPGPPGLPGQKGEQGKPGAAGRQGAKGMKGNTGPPGACGRTEYYDYVVGEKGDEGPPGP
PGPKGQRGMPGPHGPPGDAGRPGVTRPGLRGPPGFPGPKGIKGEKGQTGLCVVGPPGLPG
ITGKPGSVGLPGPPGEPGRVTFRTGLPGLPGEPGCTGPPGPPGDIGMKGDEARVCTDCSY
IPGIPGRPGSPGPHGQDGMPGREGTTGPKGSPGSPGAPGFPGAQGPPGFRGDQGHKGSKG
EPGYVYPEGPKGERGDPGARGDKGRKGSSGFLGRPGSKGSKGSKGEKGLAGSKGDRGLPG
LPGSLGLPGEMGLPGLPGYGPQGIRGFKGSKGIPGPPGLPGEAGLKGETSRITPLPALPG
PQGPDGLPGPPGVPGRAGARGQQGDSGHPGPTGDTGFPGLGFPGNPGPKGNKGLAGGRGS
PGCEGKIGDPGRAGNLGQPGEKGDPGVVIPGEPGRLGSPGGRGIPGSKGDTGFPGLPGLP
GSAGHDGDDGLRGDRGSPGVPGDPGFPGKPAECLIGLPGLPGGQGATGPPGGRGLQGSKG
KLGPPGLSIPGTYGKPGEPGLIGLQGNTGLPGPKGQSGRPGISGVPGLRGEPGIMGLLGI
PGPSGTIGRPGIPGIRGSSGIPGLKGRKGFLGAKGEPGDKGFPGPSETLVGIGNKGERGL
KGVQGRMGLRGEKGDAGVQGPPGLDGSEGVPGLPGVKGFMGLPGVPGRQGFPGAPGNKGD
MGIPGPNGEKGSPGFPGPSGDPGPPGYGGFPGDKGDPGYPSAGPPGEPGPKGDPGPPGVL
GSKGEKGSQGHPGHKGVPGPHGIRGETGSAGIPGKLGPPGDIGVKGQQGCPGQQGITGPP
GAVGDPGRKGLVGERGNQGQDGMPGPPGVKGEPGAPGRGIPGLRGVPGRRGIKGDMGLPG
FPGPPGMKGHQGDQGPIGPPGLVGLPGFQGATGMAITGQKGNRGIAGADGRPGAPGFPGP
PGLPTLSMKGIKGVRGADGIPGSTGPAGDTGPPGPKGIEGRPGYPGARGDPGFLGFPGVK
GEKGNRGPPGPQGVEGPRGPKGQRGPPGVPGRIFSIPGSKGPPGLPGIPGAPGDQGIQGI
PGLQGPKGLKGLPGSFGHPGQPGLPGPKGDRGFPGQRGEPGLIGFPGLQGLPGSPGSIIA
GPTRRGFIFTRHSQSTKIPSCPHGTSQIYVGYSLLFVQGNERAHGQDLGTAGSCLQRFTT
MPFLFCSTNDVCSFASRNDYSYWLSTATVMPVDMAPISGRALEPHISRCVVCEGAAMVIA
VHSQTTAVPPCPEGWVSLWKGFSFVMYTSAGSEASGQALASPGSCLEEFRAIPFIECHGR
GTCNYYTNSYSFWLASLNPRRMFRRPLSQTLKAGELENIISRCQVCMKRPV
NT seq
5016 nt
NT seq
+upstream
nt +downstream
nt
atggctggcaggggctgccccagccgcctggcgccgctgctgctgctcgccctgctgtgg
ccgggccgcgccgcgggggctgagagctgtgtatgcaaaggtaaaagtccctgcttttgc
gatagcatgaaaggtaataagggtgaaaaaggctttcctggtgctccaggtccacctggt
cttagaggctttcctggtccagaagggcctccaggaccacagggaccaaagggttctcca
gggcttaccggcttagttgggcccaaaggcatacgaggactcccaggactacctggattt
tcaggtcccccaggccttccaggtgaaccgggaactgttggtcctcctgggcgctcgggt
gttccaggatgcaacggcacaaagggcgatcaaggttttccaggtcctccaggtagaaga
ggtgctccaggcattccaggtattcctggcatcaaaggagagaaggggtgccctgcagag
gtatataaccaagggtatggtgcaaaaggtgatcctggattaccaggaatgcctggactt
cagggtgcccagggtgctcaaggatatccgggagaacttggaccacagggccctccagga
ccttcaggcatgccaggaaaagcaggacctcctggacctaagggtcttatgggactgaaa
gtaataggaaccaaaggaaggaagggtgacactgggttaactggaccccctggaccacca
ggaaccgttattgtgacattaagcggaccagacaacatgacggacttgaaaggagagaaa
ggagaaaaaggatcaagaggacttccaggaccagtggggtttacagggccagatggtgat
tctcaaagtgaaaagggtgaccaaggagaacccggagcacagggtaaacctggaaaagat
ggtgccccgggtccacctggcttaccgggacaaaagggtgaacagggcaaaccaggagcg
gctggcaggcaaggagctaaggggatgaaaggaaacactggtccgcctggagcttgtggt
cgaacagagtattatgattatgtggttggtgaaaaaggagatgaaggaccccctggacct
ccaggaccaaaaggtcaacgtggcatgcctgggccacacggtcctcctggagatgctggt
agaccaggtgtgacaagacctggtctgagaggtccccctggatttcctgggccaaaagga
ataaaaggagagaaaggacaaactggcttgtgtgttgtaggccctccaggactacctggt
attactggcaaacctggttctgttggattaccaggtcctccaggagaaccaggtagagta
acatttcgaacaggcctgccaggacttcctggagagccagggtgcacaggacctccggga
cctccaggagatattggcatgaaaggtgatgaagctcgcgtgtgtactgattgcagctat
attccaggaatacctggtcgtcctggttctcctgggccacatggccaggatggcatgcct
ggtagagaaggaacaacaggtccaaaaggttctccaggttctccaggagcaccagggttt
ccaggagctcaaggacctccaggttttagaggagatcaaggacataaaggatcaaaaggt
gagccaggatatgtgtatccagaagggccaaaaggtgagagaggagatccaggggccagg
ggagacaaaggaagaaaaggttcaagtggatttctgggaagacctggctctaaaggatcc
aagggctctaaaggtgaaaagggattggctggttcaaaaggagatagaggactccctgga
ttgcccggtagtcttggtcttcctggagagatggggcttcctggattgccaggatatgga
ccacaaggaataagaggcttcaaaggctctaaaggaatacctggtccacctggattacct
ggagaagctggtctgaaaggagagaccagtaggataactccattacctgcattgccagga
cctcaaggaccagatggtttacctggacccccaggagtgcctggtagagctggagcaaga
ggccagcaaggtgattcaggacatccaggcccaacaggtgacacaggctttccagggctt
gggtttcctggaaacccaggtccaaaaggaaataaaggacttgcaggaggcagagggtca
ccaggttgtgaaggaaagatcggagatccaggccgagctggaaacctaggacaaccagga
gaaaagggtgacccaggcgtggttattcctggagagccaggtagactgggttcaccagga
ggtcgtggcattcctggctcaaaaggtgatactggatttccaggacttccaggcctacca
gggagtgctggacatgatggtgatgatggcctaagaggagatcgtggctcacctggagtt
cctggagatccaggttttccagggaaacctgctgaatgtcttattggcctgccaggtttg
ccaggtggccagggagctacaggcccaccaggaggaagaggtttgcaaggttcaaaagga
aaacttggccctcctggcttgagtatcccgggaacctatggaaaacccggggaacctgga
ttaataggtcttcagggaaatacaggattacctggtcccaagggacagtctggaaggcca
ggaatctctggtgtgccaggcttgaggggagagccaggtataatgggcctgttaggaatt
cctggaccctctggcacaattggaagaccaggcatcccgggtatcagaggttcttctggc
atcccaggactaaaaggaagaaaagggtttcttggagcaaaaggtgaaccaggtgataaa
ggttttcctggaccatctgagaccttggttggtattgggaataaaggagaacgaggctta
aaaggagttcaaggaagaatgggtctaagaggagagaaaggagatgccggtgtgcaaggt
cccccaggtcttgatgggtctgaaggagtacctggtctaccaggcgtcaaaggatttatg
ggtcttccaggggttcctggaagacaaggattcccaggtgcaccaggaaacaaaggggac
atgggaattccaggtccaaatggagagaaaggatctcccggctttccaggaccatcaggt
gaccctggtccaccaggctatggtggctttccaggtgacaagggagatcctgggtacccg
tctgctgggcctccaggagaacctggtccaaagggagatccaggccccccgggagttttg
ggcagcaaaggagaaaaaggatcccaaggtcatccaggtcataaaggagtaccaggacca
catgggatcagaggggaaactggaagtgcaggaatcccagggaagcttggacctcctgga
gatattggtgtcaaaggacagcagggctgcccaggacaacagggcattacaggccctcct
ggtgctgttggagaccctggaagaaaaggacttgttggtgaaaggggtaatcaaggtcag
gatggtatgcctggtcccccaggagtaaagggagaaccaggagcaccagggagaggaatc
cctggccttcgaggtgttcctggtcgtagaggaatcaaaggggacatgggactgcctggt
tttcctgggccaccaggtatgaaaggtcatcaaggtgatcaaggacccattggacctcct
ggcttagtggggttacctggattccaaggcgcaacaggcatggcaattactggccaaaaa
gggaatagaggtattgctggtgcagatggaagaccaggtgctcctggttttccagggcct
cctggtcttcccactctcagcatgaaaggaatcaaaggcgttagaggggcagatggcata
ccagggtcaacaggcccagccggcgacactggtcctcccggtccaaaaggaattgaaggt
cgaccaggttatcctggtgctagaggggaccctggatttcttggattcccaggtgtaaaa
ggagaaaagggtaatcgaggacctcctggaccacaaggtgtagaaggaccaaggggacca
aagggccagcgtggtccacctggagtccctgggagaatattctccatcccaggaagcaag
ggtcctcctggactgccaggaatcccaggagcaccaggtgatcaaggaattcaagggatt
cctggactacaaggacctaaaggattaaaaggtttaccaggaagttttggtcatccaggt
caaccaggactgcctggtccaaaaggagacaggggatttccaggacaaagaggagaaccc
ggactgattggctttccaggtctacaggggttacctggatcaccaggttctatcattgct
ggtccaacaagaagaggttttatctttacccggcatagtcaatcaacaaagattccttca
tgcccacatgggacatcgcagatctatgttggctattcactgctttttgtacaaggaaat
gaacgagcacatggacaagatcttggaacagctggtagctgcttgcagagatttaccacc
atgccattcttattctgtagcaccaatgatgtttgtagttttgcttctcgcaatgactat
tcatactggctgtcaactgcaacagtaatgccagtagatatggcaccgatttctggcagg
gcactagaaccccatataagcaggtgtgttgtctgtgaaggagctgcaatggtaatagca
gttcacagccaaacaactgcagttcctccgtgtccagaaggctgggtatctctctggaag
ggtttttcttttgttatgtatacaagtgccggctcagaagcttctggccaagcattggca
tctcctggatcttgtttggaagaatttcgagctatcccattcatagagtgccatggcagg
gggacgtgcaactactacacaaattcctacagcttctggttggcatcattaaatccaaga
agaatgttcaggagacctctgtcacagactttgaaagcaggagaactagaaaatatcatc
agccgctgtcaggtctgcatgaagagaccagtctaa
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