KEGG   Larus michahellis (yellow-legged gull): 141746448
Entry
141746448         CDS       T11135                                 
Symbol
COL6A1
Name
(RefSeq) collagen alpha-1(VI) chain
  KO
K06238  collagen type VI alpha
Organism
lmic  Larus michahellis (yellow-legged gull)
Pathway
lmic04510  Focal adhesion
lmic04512  ECM-receptor interaction
lmic04518  Integrin signaling
lmic04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:lmic00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    141746448 (COL6A1)
   04518 Integrin signaling
    141746448 (COL6A1)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    141746448 (COL6A1)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    141746448 (COL6A1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:lmic04147]
    141746448 (COL6A1)
   00536 Glycosaminoglycan binding proteins [BR:lmic00536]
    141746448 (COL6A1)
Exosome [BR:lmic04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   141746448 (COL6A1)
Glycosaminoglycan binding proteins [BR:lmic00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   141746448 (COL6A1)
 Hyaluronan
  Extracellular matrix or blood plasma proteins
   141746448 (COL6A1)
SSDB
Motif
Pfam: VWA Collagen VWA_2 DUF1194 vWA-TerF-like DUF5507
Other DBs
NCBI-GeneID: 141746448
NCBI-ProteinID: XP_074451074
LinkDB
Position
7:complement(38440779..38466103)
AA seq 1023 aa
MRLRGFLLTLLLPVVFLGGASWAQRPEITTRIANAEDCPVDLFFVLDTSESVALRVKPFG
DLVAQVKDFTNRFIDKLTNRYYRCDRNLVWNAGALHYSDEVVLIKSLTSMPSGRNELKNR
VSAVNYIGKGTYTDCAIKRGIEELLISGSHHKENKYLIVVTDGHPLEGYKEPCGGLDDAA
NEAKHLGIKVFSVAISPNHLDQRLNIIATDHAYRRNFTATSLKPTRELDVEDTINTIIDM
IKVNTEQSCCSFECQPPRGLLGPPGDPGNEGERGKPGLPGQKGEAGDPGRPGDMGPVGYQ
GMKGDKGSRGEKGSRGAKGAKGEKGRRGIDGIDGMKGEAGYPGLPGCKGSPGFDGAQGPP
GPKGDPGAYGPKGGKGEPGDDGKPGRQGIPGSPGEKGAPGNRGEPGPAGETGDEGPPGAD
GPPGERGSNGERGPPGSPGDRGPRGELGEPGPPGDQGREGPLGPPGDQGEAGPPGPKGYR
GDDGPRGNEGPKGLPGAPGLPGDPGLMGERGEDGPPGNGTIGFTGAPGQPGDRGDPGING
TKGYVGPKGDEGEAGDPGNDNLTPGPRGIKGAKGHRGPEGSPGPQGPVGPPGPDECEILD
IIMKMCSCCECTCGPVDLLFVLDSSESIGLQNFQIAKDFIIKVIDRLSKDERVKFEAGES
RVGVVQYSHDNTQELVAMGDANIDNIGALKQAVKNLKWIAGGTYTGEALQFTKDNLLRRF
TSDKRVAIVITDGRSDTLRDPTPLNSLCDVTPVVSLGIGDIFRNPPNPDHLNDIACLSRP
TRPGLSIQRDNYAELLDDTFLQNITSYVCQEKKCPDYTCPITFAGLADITLLVDSSTSVG
SKNFETTKKFVKRLAERFLEAGKPADDSVRVSVVQYSGRNQQKVEAQFQYNYTVIAKAID
NMEFINDATDVNAALRYVTGLYQRSSRAGAKKRVLVFSDGNSQGITARAIERAVQEAQQA
GIEIYVLAVGSQANEPNIRVLVTGKSADYDVVYGERHLFRVPDYTSLLRGVFYQTVSRKI
AVD
NT seq 3072 nt   +upstreamnt  +downstreamnt
atgaggttgcgaggctttctactcactttgctgctcccggttgtcttcctggggggggcc
tcatgggctcagcgcccagaaatcaccactcggatcgcaaatgcagaagactgccctgtg
gacctgttctttgtcctggacacctcagagagtgtcgccctgagggtgaagccctttggg
gacctggttgcccaagtgaaagatttcaccaaccggttcattgataagctgacaaacagg
tactaccgctgcgaccgcaacctggtgtggaatgctggggcactgcactacagcgatgaa
gttgtgctcatcaagagcctcacctcgatgcctagtggccggaatgagctgaagaaccgt
gtctcagctgtgaactacattgggaagggcacctacactgactgtgccataaagcggggc
atcgaggagctgctcatcagtggctcccatcacaaagaaaataaatacctgatcgtggtg
acggatggacaccccttggaagggtacaaggagccctgcggaggcctggatgatgccgcc
aatgaagccaaacatttagggatcaaagtgttctctgttgccatctcccccaaccacctg
gaccagcggctcaacatcattgccacggaccatgcctaccgccgcaacttcactgccacc
agcctgaagccaacccgtgagcttgacgtggaggataccatcaacaccatcatcgacatg
attaaagttaacacagagcaatcgtgctgctcctttgagtgccagcctccccgaggactc
cttggacctcccggtgacccgggcaatgagggagaaagaggcaagccaggtcttcctggc
cagaaaggagaggctggagacccaggcagaccaggagacatgggacctgttggctaccaa
ggaatgaagggtgacaaaggaagtcgaggagaaaagggctcaagaggagccaaaggagcc
aagggtgagaaaggcaggcgtggaattgatggcatcgatggcatgaagggggaagctgga
taccctggtttacctggctgcaaaggctcacccggattcgatggagctcaaggcccgcct
ggaccaaagggagatcccggtgcttatggacccaagggaggaaagggggagcctggggac
gatggaaaacctggccgacaggggattcccggcagccctggagaaaagggcgcgcctgga
aaccggggtgagcctggaccagcaggagagacgggcgacgagggccctccaggcgcagat
ggtcctccaggagaacggggcagcaatggagaaagaggccctccgggctcaccaggtgac
cgcgggccaagaggagagctgggagagcctggaccacctggtgaccaagggcgggaagga
cctctcggaccccctggcgaccagggcgaggctggacctccaggacccaaaggctacagg
ggagacgacggcccccgcggcaatgagggcccaaagggattgcctggagcacctgggctg
cctggagaccctggcctgatgggagaaaggggggaggatggccctcctgggaatggcaca
attggattcacaggtgccccggggcagccaggagacagaggtgaccctggcattaatgga
acgaaaggctatgttggtcctaaaggtgatgaaggagaagctggagaccctggcaatgat
aacctaacccctggccccaggggcatcaaaggagcgaagggccacaggggacctgaaggc
agcccgggaccacaaggacctgtggggcctccaggaccagatgaatgtgaaatcttggac
atcatcatgaagatgtgctcttgctgcgagtgcacctgcggtcctgtcgacctcctcttt
gtgctggacagctcggagagcatcggcctgcagaacttccagattgccaaggacttcatc
atcaaagtcatcgaccgcctgagcaaggatgagcgtgtgaagtttgaagctggcgagtcc
cgcgtgggcgttgtgcagtacagccatgacaacacacaggagctggtggccatgggggat
gccaacatagacaacataggggcactcaaacaggcagtcaagaacctgaaatggatagcc
gggggcacgtacactggagaagccctgcagttcaccaaggacaacctgctgcggagattc
acctctgacaagcgcgtcgccattgtcatcacggacggacgctctgacacattgcgggac
cctacgccgctcaactctctgtgcgatgtcaccccagtggtttcccttgggataggtgac
attttccggaaccctccaaatccagatcacctgaatgacatcgcctgtttaagcagacca
accaggccaggactgtccattcaaagggacaactacgccgagctcctagatgacaccttc
ttgcagaacatcacctcgtatgtctgtcaagagaagaaatgtccggactacacctgccca
atcacctttgctgggctggcagacatcacgctgctggtggacagctccaccagcgtgggg
agcaagaacttcgagactaccaagaagttcgtgaaacggctggcggagcggttcctggag
gccggcaagcctgcggatgattctgtgcgtgtctcagtggtccagtacagtggcaggaac
cagcagaaagtggaagctcagttccagtacaactacacagtcattgccaaagccattgac
aacatggagttcattaatgacgccacagacgtcaacgccgctctgcgctatgtcacaggg
ctgtatcagcgatcctcccgtgctggggcaaagaagagggtgctggtgttttctgatggc
aactctcaagggattaccgcgagggccattgagagggctgtgcaggaagctcagcaggct
ggcatcgagatctacgtgctggcagtgggcagccaagccaacgagcccaacatccgtgtc
ctggtcacggggaagagcgcagattatgacgtggtctacggggagcgccacctcttccgt
gtgcctgactatacatctctgctgcgtggtgtattctaccaaaccgtctccaggaagata
gctgttgactga

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