Larus michahellis (yellow-legged gull): 141747073
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Entry
141747073 CDS
T11135
Symbol
COP1
Name
(RefSeq) E3 ubiquitin-protein ligase COP1 isoform X1
KO
K10143
E3 ubiquitin-protein ligase RFWD2 [EC:
2.3.2.27
]
Organism
lmic Larus michahellis (yellow-legged gull)
Pathway
lmic04115
p53 signaling pathway
lmic04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
lmic00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
141747073 (COP1)
09140 Cellular Processes
09143 Cell growth and death
04115 p53 signaling pathway
141747073 (COP1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lmic04121
]
141747073 (COP1)
Enzymes [BR:
lmic01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
141747073 (COP1)
Ubiquitin system [BR:
lmic04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
141747073 (COP1)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
141747073 (COP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
WD40_WDHD1_1st
Beta-prop_EML_2
zf-C3HC4_2
Beta-prop_EIPR1
WDR55
Beta-prop_RIG_2nd
EIF3I
Beta-prop_WDR19_1st
Beta-prop_TEP1_C
zf-C3HC4
zf-RING_2
zf-RING_UBOX
Beta-prop_EML
Beta-prop_CAF1B_HIR1
Beta-prop_DCAF4
zf-C3HC4_3
zf-RING_5
Beta-prop_WDR90_POC16_2nd
zf-C3HC4_4
WD40_RFWD3
RING_XB3-XBAT31
Beta-prop_WDR35_TULP_N
Beta-prop_Vps41
WD40_like
Beta-prop_IFT140_1st
Beta-prop_DCAF12
Beta-prop_IFT122_1st
zf-rbx1
zf-RING_10
zf_C2H2_10
zf-RING_11
Sina_RING
Motif
Other DBs
NCBI-GeneID:
141747073
NCBI-ProteinID:
XP_074452777
LinkDB
All DBs
Position
8:complement(22630875..22779077)
Genome browser
AA seq
705 aa
AA seq
DB search
MSGSRPPPHSAAPPAATPAASSSSSSSSSAAMAPGSSSSSGAAARPVLVAAAVSGSGLAR
LAAAARPGGGGGCSGGGGGSGAGGGGGSRKRPLLTPLCNGLINSYEDKSNDFVCPICFDM
IEEAYMTKCGHSFCYKCIHQSLEDNNRCPKCNYVVDNIDHLYPNFLVNELILKQKQRSEE
KRLKLDHSNGHRWQIIQDLLGTDQDNLDLANVNLMLELLVQKKKQLEAESHAAQLQILME
FLKVARRNKREQLEQIQKELSVLEEDIKRVEEMSGLYSPVSEDSTVPQFEAPSPSHSSII
DSTEYSQPPGFSGSSQTKKQPWYNSTLASRRKRLTAHFEDLEQCYFSTRMTRVSDDSRTT
SQLDEFQECLSKFTRYNSVRPLATLSYASDLYNGSSIVSSIEFDRDCDYFAIAGVTKKIK
VYEYGTVIQDAVDIHYPENEMTCNSKISCISWSSYHKNLLASSDYEGTVILWDGFTGQRS
KVYQEHEKRCWSVDFNLMDPKLLASGSDDAKVKLWSTNLDNSVASIEAKANVCCVKFSPS
SRYHLAFGCADHCVHYYDLRNTKQPIMVFKGHRKAVSYAKFVSGEEIVSASTDSQLKLWN
VGKPHCLRSFKGHINEKNFVGLASNGDYIACGSENNSLYLYYKGLSKTLLTFKFDTVKSV
LDKDRKEDDTNEFVSAVCWRALPDGESNVLIAANSQGTIKVLELV
NT seq
2118 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggcagccgcccgccaccgcactccgctgcgccgcccgccgccaccccggccgcc
tcctcctcctcttcctcctcctcttcggcggccatggcgccgggctcgtcctcctcaagc
ggcgcggcagcgaggcctgtgctggtggcggccgccgtgtcaggctcggggctggcccgg
ctggcggcggcggcgcggcccggcggcggcggcggctgctccgggggaggcggcggtagc
ggcgcgggcggcggcggcggcagcaggaagaggccgctgctcaccccgctctgcaacggg
ctcatcaactcctacgaggacaagagcaacgacttcgtctgccccatctgttttgatatg
attgaagaagcttacatgacaaaatgtggacacagcttctgctataaatgtattcaccag
agcttggaggacaataacagatgtcccaaatgcaactatgttgtggacaacatagatcat
ctttatcccaacttcttagtcaatgaacttattcttaaacagaagcaaagatctgaggag
aaaagactcaaactggaccattcaaatggccataggtggcagataattcaagatttactg
gggactgatcaagacaatcttgacttggccaatgtcaacctgatgctggagctgctggtg
caaaagaagaagcagttggaagcagagtcccatgctgcccaattgcagatccttatggaa
tttctcaaagttgccaggagaaacaaacgagagcaattggagcagatccagaaggagcta
agtgttctggaagaagatattaaacgagtagaggaaatgagtggcttgtattccccagtc
agcgaggacagtacggtgccgcagtttgaggctccttcaccttcacacagtagtattatt
gattccacggagtatagccagcctccaggattcagcggcagttctcagaccaaaaagcag
ccgtggtataacagcacgctagcctcacgacgcaagcggctcacagctcattttgaggac
ctagagcagtgctatttttccaccaggatgacacgtgtctcggatgacagcagaaccaca
agccagctggatgagtttcaggagtgtctatccaagttcacgcgctacaattctgtccga
cccctggcaacactgtcttacgctagtgacctctacaatggctccagcatagtatccagt
attgagttcgaccgagactgtgactactttgccattgctggggtgacaaagaagattaaa
gtctatgagtatggtacagtcattcaggatgcagtggatattcactaccctgagaatgaa
atgacctgtaattccaaaatcagctgtatcagctggagtagttaccacaagaacctgcta
gccagcagtgactatgaaggcacagtcatcctgtgggatggattcacaggacaaagatcc
aaagtctaccaggagcatgagaaaaggtgctggagtgttgactttaacttgatggaccca
aaactattggcttcaggctcagatgatgccaaagttaagctgtggtctaccaacttggac
aactcagtagcaagcatcgaggccaaggctaatgtgtgttgtgtcaaattcagcccctct
tctaggtatcacctagcttttggctgtgcagatcactgtgttcactactacgatcttcgc
aacactaagcagccaatcatggtgttcaaagggcatcgcaaggcagtctcctatgcaaaa
tttgtgagcggggaagaaatcgtctctgcgtcaacagacagtcagctgaagctgtggaac
gtagggaagcctcactgcttacgctccttcaagggtcacatcaacgagaagaattttgtt
gggctcgcatccaatggagactacattgcttgtggaagtgaaaataattctctttaccta
tactataagggcctctcaaagacactgctgacgttcaagtttgatacagttaaaagtgtc
ctggacaaggaccggaaagaagatgacacaaatgagtttgtgagtgctgtatgctggagg
gcactaccagatggggagtccaacgtgctgattgctgctaacagtcagggtacaattaag
gtactggagctggtatga
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