Larus michahellis (yellow-legged gull): 141747087
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Entry
141747087 CDS
T11135
Symbol
PALB2
Name
(RefSeq) partner and localizer of BRCA2 isoform X1
KO
K10897
partner and localizer of BRCA2
Organism
lmic Larus michahellis (yellow-legged gull)
Pathway
lmic03440
Homologous recombination
lmic03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
lmic00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
141747087 (PALB2)
03460 Fanconi anemia pathway
141747087 (PALB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lmic03400
]
141747087 (PALB2)
DNA repair and recombination proteins [BR:
lmic03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA complex
141747087 (PALB2)
FA (Fanconi anemia) pathway
Downstream FA components
141747087 (PALB2)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PALB2_WD40
Motif
Other DBs
NCBI-GeneID:
141747087
NCBI-ProteinID:
XP_074452813
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All DBs
Position
8:complement(8177158..8188507)
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AA seq
1398 aa
AA seq
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MAARLPWTRASRGRPLWRDRRPWKERRLLRDRGRRRRPAGRPSAAPRRRRCGARRGTERG
PARRCQPQPGALCLAAEGEAGAAEEGVQRDRQPAAAGAASRASPEPRPGHGGGRRPVGAE
PCRSTALPDPDCSRDNVSPSADKHGTPQLQTKTCSDPGTEKKTPVAFKHAPEFSDNEISL
SGSSQAESIQPSQENLCCGIVRPAPEEKKPKTSRSLMKLRRRAKAPVSEERESVHDGPLI
NSDEMVKNQIANTEELRSPVFRRSSVLNIEENTQRVSSPALVGREENSFTPPSAALGVVQ
DVLGDSVPLEVPELFLGALRDSSDVWQPESPGAEAISDNCEPAQPCSENGDSVLLDISAD
GGNESSSIIKQTDSESMCEDRGELHRLLDLMSENEVLPADGNNTVSNESKSHEGNQSDTN
SLNPSPTDLALGNVEELLENQQLEIQSRLPHTEKVTAPESTLNSCTVVEGLLFPVEYYIR
TTRRMSNCQRKVDLDAVILSQLGRSKKGQRSKCKQKDANLDWHSQERVENDSESGVVPSP
FLGAENDSANSSTQKSLAASSGSSTSLGSISQSSITSTKQDQRRSQRKQKGRRKSTCKPS
VHQVSQELIESLDLIPPRESSSLLSNERQSEKENREANLEKSSSDERRLSAAAALGSGET
EVAGAIQPTSSDPPPGGSQVLGKCHKTLSEQVQNPLQNKDSLNPGNETFASHIGDLEANL
GVCQGDKHPVEHVKNQYVQGACRAEELLAINVPLRRSLRSSARQRASQVSKDESKRRRSY
PVRSGDPASLHLPATDPDTCSSLFCFRSPQWLAPRLGIRDFHLPDEEFGLLKLEKLESSP
VNDLEVFVPNTFGDGAASGDAQDAEMNPEEKRLKSNLISPFKNGSPKLPHVESPASKKEL
STHALFLTPMGTVLAGAPTQPESQISSSVFPVVGATPAILPSVCSEVFPSTPSVSPSQAN
PHFSRGASAQVVDDGECKDSAVPLHLDSCGAGSARKEEEQSTTFNLEAPHNESDEAVALE
KHQQSESKQQRSCRASPEQKKDVAEQMTPVLFDGLREESLQLVSKLKDSSSSCAVDVSTV
WWEAAGCRELCVVTACESSVSLWKPLASDHWGKVYTWQVGEIPVIQIVPLPDACNLVCIA
LGDLEIGEIRLLLYSSENDLFKQSLVKTGNIKAVLGIKDRRLVSSSRTVQEQQVEIVSLS
ETGRCKDGQTLMPPEETVLAFAEVEGARDALVGTTAVNSIVVWNLKTGQLLKKMHVGYSY
PASICHRAYSDSGLLFVVLSHPHAKESESCGNPAFRVVAFNPKTARSTGVMFSSLPPGHA
GRYLEGDVKDASAAAVLTSGAIAVWDLLLGQCTALLPPDPEGSWALARWATTSACLLAGQ
RDGTVCLYQYQQPQPGVA
NT seq
4197 nt
NT seq
+upstream
nt +downstream
nt
atggcggcccggttgccatggacacgcgcttcccgcgggaggccgctatggagggaccgg
cggccatggaaggaacggcggctgctgagggaccgggggaggcggcggcggccggcgggg
aggccctcagcggcgcccagaaggagaaggtgcggtgcccggcgcgggaccgagcggggc
ccggcgcgacggtgccagccccagcccggtgcgttgtgtcttgcagctgagggagaagct
ggcgctgctgaggagggagtacagcgagaccgtcagccggctgcggcgggcgcggcgagc
cgagcgagtccggagccacggccggggcacggcggaggaaggaggccagtgggagcggag
ccctgcaggtctacagcgctccctgatcccgactgttctagagataacgtatctcctagt
gctgacaaacatggaacccctcagttacagactaaaacctgctctgatcctggcacagag
aagaaaacacctgttgcatttaaacacgctcctgaattctctgacaatgagattagcttg
tcaggcagctcgcaggcagaaagcatacagcctagccaggaaaacctgtgctgtggaatc
gttaggcctgcccctgaggagaaaaaacccaaaacctccagaagcttgatgaagctgagg
agacgggcaaaggctccagtatcagaggaaagggaatcagtgcatgatgggcctctaatc
aacagtgatgaaatggtgaagaatcaaattgccaataccgaggaacttcggtcaccagtc
ttcaggcgaagcagtgtcttgaacattgaggaaaacactcaaagagtatccagcccagca
cttgtggggagagaagaaaacagtttcactcctcccagtgcagcgttaggagtcgtccaa
gacgtgcttggagacagtgtccctctagaagtgcctgagctgttcctgggtgcgctgagg
gacagcagcgatgtctggcagcctgagtccccaggtgctgaggccatatctgataactgt
gagcctgcacagccatgttcggagaatggtgactctgttttacttgacatcagtgctgat
ggaggaaacgaatcttccagtataataaaacaaacggacagtgagagtatgtgtgaagat
cggggagaattacataggctcttggatttgatgtcagaaaatgaagtattgcctgccgat
ggaaataacactgtatctaatgagagcaaaagccatgaaggaaatcaaagtgacactaat
agcttaaatccctctcctacagatcttgcgctgggcaatgttgaagaactgttggagaat
caacagcttgaaattcagtcaagacttcctcatacagaaaaggtgacagctcctgaaagt
acattgaactcttgcacagtggttgaagggcttctctttccagttgagtactacatcagg
acaactcgacgcatgtctaattgccagaggaaagtggatcttgatgctgtaattctcagc
cagctgggcagaagcaagaaaggtcagcgaagtaagtgcaagcagaaagatgcaaattta
gattggcactcccaagaaagagttgaaaatgattcagagtcaggggttgtgccgtcccct
tttcttggtgctgaaaacgattcagcaaattcaagtactcagaaatctcttgctgcgtcc
agtggtagcagcacgtcacttggatcgatttctcaaagcagtatcactagcacaaagcaa
gatcagagacgatcgcagaggaaacaaaagggaagaagaaagtctacctgcaaaccctct
gtgcatcaagtgtcacaggaacttatagagagtttggatctcataccaccgagggaaagc
agtagtctgctgtcaaatgagcgtcagagtgaaaaggaaaaccgtgaggctaatcttgaa
aagtcatcttcagatgagagaaggttgtctgctgctgcagctcttgggtctggagagaca
gaagtggccggcgctatacagccaacgagttctgatcctcctcctggaggaagccaagtg
cttggcaaatgccataagactctgtcagaacaggttcaaaatccgcttcagaacaaggat
tctctgaacccaggaaatgaaacttttgccagccatataggagatctggaagccaactta
ggtgtgtgtcagggtgataaacatccagtggagcatgttaagaatcagtacgtgcaagga
gcctgcagggctgaggagctcctagcaattaacgtccctctgcgtcgctccctgcgttct
tctgcaagacagagagccagtcaagtctcaaaagatgagagcaaaagaagacgtagctat
ccagtgcgttcaggggatcctgcttctcttcacctccctgctacggaccctgacacttgc
agctctctcttctgctttcgcagtccccagtggctggcccccaggctgggaatcagagac
tttcacttaccggatgaggaatttggactactaaaacttgagaaattagaatcttcccct
gtgaatgacttggaggtttttgttcctaatacgtttggagatggtgcagcttcaggggac
gcacaagatgcagaaatgaatccagaagaaaaaaggctcaaaagtaatttgatttcgcct
ttcaaaaatggatcacccaagttacctcacgtagaaagcccagcttccaagaaagaactt
tccacccatgctttgttccttactcccatggggactgtcttagctggtgctcccactcag
cctgagtctcagatttcctcatctgtttttcctgttgtgggtgcaaccccagccatttta
ccatcagtatgcagtgaggtcttccccagtacaccttccgtatctccctcacaagcgaac
ccacatttctccagaggggcatctgcccaggtcgtggatgatggggaatgcaaagactct
gccgttccactgcacttggacagctgtggtgcaggatctgctagaaaagaggaggaacaa
agtacaacatttaatttagaagctccccataatgaatctgatgaggctgtggccttggag
aagcatcagcagtcggagagcaaacagcagagatcctgcagggcttctcctgagcagaag
aaagatgtggcagaacagatgactccggtactgtttgatggcctcagagaagagagcttg
cagcttgtatcaaagctaaaggattcttcaagttcctgtgctgtggacgtgagtaccgtg
tggtgggaagcagctggctgcagagagctgtgcgtggtgactgcttgtgagagttctgtc
tccttgtggaaacctctggcatctgaccactggggaaaagtctatacttggcaggtcgga
gagattcctgtaatacagattgttcctctgccggatgcctgtaatcttgtgtgtatagca
ttgggagatttggagattggagaaataaggctcttgctttattcctctgagaatgactta
ttcaagcaatcactagtaaaaactggaaatataaaagctgttcttgggataaaggatagg
aggctggtcagcagcagcaggactgtgcaagagcagcaagtggaaatagtgtcgctttca
gagacgggaaggtgcaaggatggacagactttgatgccccccgaagaaactgttttagct
tttgctgaagtagaaggagcgagagacgccttggttggcaccactgcagtgaacagcatt
gttgtttggaatttgaaaacgggccagctcctgaagaagatgcacgttggttattcctac
ccagcttccatctgccatcgagcatattccgactctggacttctgtttgttgttttaagt
catccccacgccaaagagagcgagtcctgtggaaaccccgcgttccgcgtggtagcgttc
aaccccaaaacagccaggagcacgggggtgatgttctcctccctcccacctggccatgct
ggaaggtacctggagggtgacgtgaaggatgcttcggccgcagccgtgctgacgtcggga
gccatcgcggtgtgggacctgctgctggggcaatgcacagcgctgctgcccccggaccca
gaggggagctgggcgctggcccgctgggccaccaccagtgcctgcctgctggccgggcag
cgggatgggaccgtctgcctctaccagtaccagcaaccccagccaggagtggcctga
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