Larus michahellis (yellow-legged gull): 141747543
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Entry
141747543 CDS
T11135
Symbol
SLX4
Name
(RefSeq) structure-specific endonuclease subunit SLX4 isoform X1
KO
K10484
structure-specific endonuclease subunit SLX4 (BTB/POZ domain-containing protein 12)
Organism
lmic Larus michahellis (yellow-legged gull)
Pathway
lmic03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
lmic00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
141747543 (SLX4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lmic04121
]
141747543 (SLX4)
03400 DNA repair and recombination proteins [BR:
lmic03400
]
141747543 (SLX4)
Ubiquitin system [BR:
lmic04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul3 complex
Adoptor and target recognizing subunit (BTB)
141747543 (SLX4)
DNA repair and recombination proteins [BR:
lmic03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
141747543 (SLX4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Slx4
BTB
zf-C2H2_jaz
B129_C2H2-zf
zf-C2H2_4
Zn-C2H2_12
zf-met
Motif
Other DBs
NCBI-GeneID:
141747543
NCBI-ProteinID:
XP_074454059
LinkDB
All DBs
Position
8:complement(16820578..16854439)
Genome browser
AA seq
1874 aa
AA seq
DB search
MDEQDNDFKELWANLLGRAKKKAGDAEAAKRAQSRSKSTAARSKLRRGKAAAKSQNHHHL
PAAKATNFHQDLGPKKQTLVHKDDDDAVACSSGETAQGDGKRSPFPASQQSTVSTECSQR
TLTVNTLSGSSQTTLSFHPATQPGTCASPTSKIPPLAGSKMRVAELVVERMQQFKRVAPE
QLKHTTNDGLPKSVASMDFPDESQEQNPPENDTHHLPSMEHDGALALALQQETKEEALAS
LEDVGLFFCQICQKDLSAMNTVRREQHVNRCLDEMEEAQMSSSSKPPVPECPICGKQFQT
PQSRVSHLKRCAVEMDVPPNLLLQAVQLQVATFGDAPLQSPSNQPSRSKRKGTAKEDSKK
TQKRAKMETKDEDLLVAMAMSRSLLEQEKQEQAKSVTNVKPVAALPIKWKPGSEKKRRRR
GPTATPPLLLQDPEKARKRIQERVAMLLAEEVEFPPTPKLPTSRILEDKSGKATWLLPLS
KTRQCFLWNISALTGPYDPESFYTAELIPPIVPWKPVQNHKPENLLPSVESDQPKTSQQI
QPDLSSHEPMCTQVGGQTSDESKSGREGDGQFLSHSQKDVQTLQDLVELAREGLTLTQWN
LDVDHVQAAEQPGEELTSSDTPHSGFVPASKEKSLLMSSGKRSSLRVLAEDFSAMVNNPH
LSDVQFQVDSGEVLYAHMFVLYARCPQVVQLVHSEGFLVEEDGNAQTRRVLLSDVTGEAV
CAFLRYLYAADADIPAGVLPQVGTLAARFGVRELMAKCENNTGESQVSSGVDSEDDLISV
RDEKDCEDRAENFQDLLKSVWVGEDEEEEPMLDPECQKEDDNGVGEQELEEIYEFAATQR
KMAQGETEVSEGTDCSVCSDTEAAQGTNQQTEEEEVERSESASISNNFKDLRDDSDVERS
KCGSSAQEKMQNINRCKSVNAAQTTFFLHHSEPQKWDVASHGATANEGETVRRDEGVKDS
KSSQVSHDGADHREEQFPNFNSDTNINESYEHLFSATQGDYCEPSPMEEVIRESGKAPSE
KHVDVNDSHLYSKSQKDLSAHRNGFYRSPPPKLYVPLFPALGSSPASPKTERKRAREHVS
TPKQNKKEKSFPSDETRFQKANERDTASRNDNTISPAELLNVDLNKHTYVPVLSSPIVRT
GDAAAQGNEEGDVIVLSSDDEMELQQNKKSPESGSAQKEMEIPGQLKCTNIERGPETPKP
EPNSSVAETELRSTQGSGGITDTGHISNNVKISTELPLSRQMDACTESKRSPNLSPQKSL
GHEMSSRTDSSWLVPDTPVLSKSRSFSTQTVITSINFLKSPGSKLSTKNLAADNSNHEMA
GNLIKVGETMLSDKHLPMETSVSGGSLPSSPAAGSFSKNSPPVSPADPVLSPGHTNIKSK
CAKISFLSQPAPPRQEQLSEDKANISVVEVEDSEKEISLPSVSSSVLLCDEPPVPFDDCW
QVEYLSPVRGNSQDSNRVSHAKTSTASSAQPGSWHNQWESPAHAQEIKGSTPLRGSPVGR
RTTLLCLEKSPIEACSPVGSRPSYLNSKIWDHWNGEEEEDEFPEMLPLSQRLPAAAGACQ
TDPVETPEPSFQENDKPPSTPMTPMPAYSIMETPQLKKELSRFGVRALPKRQMVLKLKEI
FQYTHRDVDSDFEDDIPSSQRPLQKSPAKRSKQSKAGQAAGGKRASAPRAVGKRKQVATA
SSVLPVGRADDDLVGAHETGCAAPKEGTKMSHHPEGGKEHKRSSVSPEGWSLEADGEEPM
LSASQESAVSSLDGSDISFGSQSSFVNGFEACAFASEEEEEEFPASQAAAREEEKLEAVR
CYIRSNTALYRRILFYEPIELADLHTELKQNGIKISKAKLLDFLDAHCITFTTAGARKEK
EQKRKGKKKQRRRY
NT seq
5625 nt
NT seq
+upstream
nt +downstream
nt
atggatgaacaggacaatgattttaaagagttgtgggcaaatcttttgggtagagcgaag
aaaaaagctggggatgctgaggcagcgaagagggctcagagcaggtcaaagagcactgca
gcaagaagcaaattaagaagaggcaaagctgctgctaagagccaaaaccatcatcactta
ccagcagcaaaggcaacaaacttccatcaagatttgggtccaaagaaacaaacattggtg
cacaaagatgatgatgatgctgtggcctgtagtagtggtgagactgcacaaggggatgga
aagagaagccctttccctgccagccagcagagtacagtgtccactgagtgtagccagagg
accctgacagtaaatactctgagtggctcttcccaaactacgttatccttccatcctgct
acgcagccagggacctgcgcttcacccacctcaaagataccgccgctggcagggtcaaag
atgcgagtagcagagctggtagtggagagaatgcagcagttcaagagagtggcacctgaa
cagctaaaacacaccacaaacgacggcttaccgaagtctgtagccagcatggatttccct
gacgaaagccaggagcagaacccaccagagaacgatacccaccatcttccatccatggag
catgacggtgctctggctttggctcttcagcaggaaaccaaagaggaagccctggcaagc
ctagaggatgtaggcttgtttttttgtcagatctgccagaaggatctctcagccatgaac
acagtgcgacgagagcagcatgttaacaggtgtctggatgagatggaagaagcacagatg
tcatcctccagcaaaccaccggtccctgaatgtcccatctgcgggaagcagttccaaacc
ccacagagccgagtcagccacttgaaacgctgtgctgtcgagatggacgttcctcctaac
ctgcttcttcaggcagtgcaattgcaggtggccacatttggggatgcacctcttcagtct
cccagcaatcaaccgagcaggtcaaagcgaaaaggcaccgccaaagaggactcaaagaaa
acacagaagagggccaaaatggagactaaggatgaagatttgctggttgctatggcaatg
tcacgctctctgttggagcaagaaaagcaggaacaagcaaaatcagttacaaatgtgaaa
ccggtggctgctttgccaatcaaatggaagccaggatcagagaaaaaacggcgtagaaga
ggcccaactgcaactccaccattactgcttcaggacccggagaaagcccgcaaaaggatc
caagagcgagtagctatgctgcttgcagaagaggtggaattccctcccacccctaagctt
cccactagtaggattttggaggataaatctgggaaagcaacctggctcttgccattgtcc
aaaaccaggcagtgctttttatggaatatcagtgctctgacaggaccctatgaccctgaa
tcattctacactgctgaattaatccctccaattgtaccttggaagcctgtgcagaatcat
aagccagagaaccttctgccttccgtggaatccgatcagccaaaaacatcccagcaaatt
cagcctgacctcagttctcacgagcccatgtgcacacaggttggaggccaaacttctgat
gaatccaagtcaggccgtgaaggagatgggcagtttttatctcacagccagaaggatgtt
cagaccctgcaggacctagttgagttggccagggaaggacttaccctcactcagtggaac
cttgacgttgaccacgttcaggcagcggagcagccaggagaagaactgacttccagtgat
actccacatagtggctttgtgcccgcgtccaaagagaagagcctcctgatgagcagcggt
aaaaggtcctctctcagggtgctggctgaagatttcagtgcaatggtcaataacccccac
ttaagtgatgtccaattccaggtggactctggggaagtcctttatgcccacatgtttgtg
ttgtacgcacggtgtccgcaggtcgttcaacttgttcacagcgaagggttcttggtggag
gaggatgggaacgcgcagacgcgccgtgtgctgctgagtgacgtgacaggagaggcagtg
tgcgccttcctgcgatacctttatgctgctgatgctgacatccccgctggggtgctgccc
caggtggggactctggctgccaggtttggtgtgagggaactgatggcaaagtgtgaaaac
aacactggagagagtcaggtgtcttctggagtggattcagaagatgatcttatctctgtg
agggatgaaaaagattgtgaggacagagctgagaacttccaagacctcttgaagtcagtg
tgggtgggtgaagatgaggaagaagaacctatgctggaccctgaatgccagaaggaagat
gacaatggggtgggtgaacaggagctggaggaaatctatgagtttgctgcaactcagaga
aagatggctcaaggtgaaacagaggtgagcgagggaacagactgcagcgtctgcagtgat
actgaggcagcccaaggtacaaaccagcaaactgaggaggaagaggtagagagatctgaa
tctgcttcaataagcaacaacttcaaagatttgagggatgacagtgatgtggaaagatct
aaatgtggctcctctgcacaggagaaaatgcagaatataaataggtgcaagagcgtgaat
gctgcacagaccactttttttcttcaccacagtgaacctcaaaaatgggacgtagcatcc
catggtgccaccgctaatgaaggagagactgttaggagggatgaaggtgtgaaggattcc
aagtcatctcaggtctcacatgatggggcagatcaccgtgaagaacagtttcctaacttc
aacagtgatactaatataaatgaaagttatgaacacttgttttctgcaactcagggggat
tactgtgagccttccccaatggaagaggttatcagagaatcaggaaaggctcctagtgaa
aaacatgttgatgttaatgattcacatctgtacagcaagtcacaaaaagacctctctgca
cataggaatggtttttacaggagtcctcctcctaaactttatgtgcccctttttcctgct
cttgggtcttcacctgcatccccaaaaacagagagaaagcgtgccagagaacacgtgtcg
acaccaaagcaaaacaaaaaggaaaaatcattcccatctgatgaaacgcgctttcagaaa
gccaatgagcgggatactgcatcaagaaacgacaacacaatttctccagcagagcttctc
aatgttgatctaaacaagcatacgtatgtgccagtgttgtcatcacccatcgtcagaact
ggggatgctgcagctcaggggaacgaggagggtgatgttattgttttatcttctgatgat
gaaatggaattacaacaaaacaagaagtcaccagagtcaggctctgctcagaaggaaatg
gaaatccctgggcaactgaaatgtacaaacatagagcgaggtcctgaaacaccaaaacct
gaacctaactcatcagtcgctgaaacagagctgagatcaacccagggctcaggtggcatt
acggatacagggcatataagtaacaatgtaaagatatccactgaattgcctctcagcaga
caaatggatgcttgcacggagagcaaacgcagtccaaacctgagccctcaaaaaagcctt
ggtcatgaaatgtcttcacgtacagacagctcctggctagtgccagacacaccggttctg
agcaaaagcagaagtttctcaacacagactgtgatcaccagtattaattttttaaagagt
ccaggatctaaactcagcacaaagaacttagcagcagataatagtaaccatgaaatggct
ggaaatttaataaaagttggtgaaacaatgttgtcagacaaacatttgcctatggaaacc
tcagtcagtggagggagccttcccagcagcccagcagcgggatcgttttccaagaactcc
ccaccagtttctccagcagatccagttctgtcccctggacacaccaacataaaaagcaag
tgtgccaagatctcatttttatcccaacctgcgcctccacgccaggagcagttgtcggaa
gataaagcaaatatcagtgtggttgaggtagaggacagtgaaaaggaaataagtctccct
tctgtgagtagtagcgtcctgctttgtgacgagcccccagtcccctttgatgactgctgg
caggttgaatatctgtcgccagtcagaggtaacagccaggactccaaccgggtcagccat
gcgaagaccagcactgccagcagcgcccaaccaggctcttggcacaaccagtgggagagc
ccagcccacgcgcaggaaattaagggcagtacccctcttcgaggaagtcctgttggcaga
agaacaactttgctctgtcttgaaaagagccctattgaggcatgttcaccagtgggcagt
agaccaagttacctgaactccaaaatctgggatcattggaacggagaagaggaggaagat
gaatttccagagatgcttcctctgtctcagcggttgccagctgcagccggtgcctgtcag
acagatcctgtggagactcctgaaccttcctttcaggagaacgacaagcctcccagcact
ccaatgacaccaatgccagcttactccatcatggagaccccgcagctgaagaaggagttg
agcagatttggggttcgtgctctcccaaaacgccagatggtgctgaagctgaaggagata
ttccagtatactcaccgggatgtggactctgactttgaggatgatatcccatcttcccag
cgtcccctgcagaagtccccagccaaacgttctaagcagtcgaaggcaggccaggctgca
ggtggaaagcgtgccagtgccccaagggctgtgggcaaaaggaagcaggttgctacggct
tcttcagtgctccctgtggggagggctgatgacgaccttgttggagcccatgaaacaggc
tgtgcagcacccaaggagggaactaaaatgtcacatcacccagaaggaggcaaagagcac
aaaaggtcatctgtatctccagagggatggtctctggaagctgatggtgaggaaccaatg
ctctcggcatctcaggagtctgcagtttcttcattggatggaagcgacatctcttttggt
tcacagagttcttttgtgaatggatttgaagcctgtgcttttgcatccgaggaggaggaa
gaggagtttccagcatctcaggcagcagctcgggaagaagagaagctggaggcagtaagg
tgctacatccgttcaaacacagccctgtaccgcaggattctcttttatgaaccaattgaa
ctggcagacctgcacacagagctgaaacagaacggcattaaaatttccaaggcaaagctg
ctggactttttagatgctcactgtatcacatttaccacagccggagcccggaaagagaag
gaacagaaaagaaaggggaagaaaaaacagaggagacgatactga
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integrated database retrieval system
