Larus michahellis (yellow-legged gull): 141747687
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Entry
141747687 CDS
T11135
Symbol
CIITA
Name
(RefSeq) MHC class II transactivator isoform X1
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
lmic Larus michahellis (yellow-legged gull)
Pathway
lmic05164
Influenza A
Brite
KEGG Orthology (KO) [BR:
lmic00001
]
09160 Human Diseases
09172 Infectious disease: viral
05164 Influenza A
141747687 (CIITA)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
lmic01001
]
141747687 (CIITA)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
lmic04054
]
141747687 (CIITA)
Enzymes [BR:
lmic01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
141747687 (CIITA)
Protein kinases [BR:
lmic01001
]
Serine/threonine kinases: Other
TAF1 family
141747687 (CIITA)
Pattern recognition receptors [BR:
lmic04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
141747687 (CIITA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
LRR_6
LRR_4
NLRC4_HD2
LRR_8
LRR_14
LRR_9
NB-ARC
NPHP3_N
nSTAND_NTPase5
nSTAND3
AAA_16
RsgA_GTPase
Motif
Other DBs
NCBI-GeneID:
141747687
NCBI-ProteinID:
XP_074454439
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All DBs
Position
8:complement(12645296..12678650)
Genome browser
AA seq
1238 aa
AA seq
DB search
MLTEWIFLILLKQFRFCSDLLQTSSDAGMNLFKEILPRVRNILSTATASDDRALLNLMLK
EDVISKEYHQALLHEKDREDLARKISLTFMEKWDLYLNTLVPLCCLNLCGSKPQNMTDNE
PTGSKYISDSKRQIMDSAFVPESGCLDLLHSDTYPLHLYTLLDPKLSGNEEGDFSADPDV
DASNYDQFNNMDFLCTMENAENVDEWYLCSNTREAYARIAELAEYVLKDQQEKQVEDTFA
GSLLDEMATENTEKFTDIKVQKCHKRTFLGSAEGCSEASEPKYKKIVEVPAVSAGNGNFL
AMPLNSHPPRSTSQTNHHGSFSVPATNALERSFIIPGSSALECLPAGVKGSQENTGFADP
PQQILNFVLGNGTSDVIIYPMLTSSTQTLTSPSFPVSLCGLEMFKEVHVPIISSEETFKR
PKSVEAFCISLMDYFQDVCKSVAMEREVTLDHLFIDGTFVQSQTETKTGKNSIKAMEKEL
VTCGLQGKEKAALKRSQIFQIPGGKDSETKVIVVLGKAGMGKSILVQKICQDWSNGEFSQ
FEFAFWFDCKQISLPEKRYSLKDLLLEFFVKPQEGSKEIFEYILQNPTKVLLLFDGFEGL
HDHENFPRCSASQPEKDLCSIKELLSGLIQKKILNGCTLLLTARPKDKVYQYVSKVDKTI
EIVGFSPQQRELYITKYFEGLPYCDNALKLIKECEYLFSHCYSPLMCRFVCFLCETVLEM
GDKSLPSTLTTVFLKFVQQKIISMKTDVTAMRNQESLATLARIAWYLGEKHQNAVKSNLL
PSKEVKEFALKHGFFLPFAFPRHSDSEEEEFGSTFSDFVIQNFLGALHLMLAEEIKDKSL
IKYLSFPSKKKKPYNWLDLVPRFLAGLLFLQDDPYFCSLSNEDVKQSTKKQKTLLKYIRR
LQINELCPERLLDLLHCIYETQSNYLLQHVALRLKTDLSFLGVVLTPPDVHVLHYILKRS
RKEFSLDLWNSSIDMQGLKDLVGLKNVASFRASLSDTVRLWKSLEQTKDYELLRASTEKF
VLDPFKAKTMKDISDLSDLVEMQEKMINCVQDASGCSSYEIPAIKNLRKLEFALGPVCGL
QGFLKLVEILAAFPSLQHLDLDALSENGIGDEGAKSLSEVFPTLTSLEILNLSQNKITDV
GAEKLATALPSLSSLKTLSLYNNNICDFGAENLAKVLPAMSSLKVLDVQYNKITGVGAQQ
LTDSLRKCPHIKNLVMWNPTIPYGVLEHLQQLDSRISV
NT seq
3717 nt
NT seq
+upstream
nt +downstream
nt
atgctgactgagtggatttttttaattctattgaaacagttcagattttgctcagacctc
cttcaaacgtcttcagatgcaggtatgaatctctttaaggagatcctacctagagtaagg
aatattctttcaactgctacagcttctgatgaccgcgcattgcttaacctcatgttgaag
gaagatgtgatatccaaggagtaccatcaagccttgctccatgaaaaagacagagaggac
cttgcaaggaagatatctctgacctttatggaaaaatgggacctgtacttgaacactttg
gttcccctctgttgtttaaacctctgtggcagtaagcctcaaaacatgacagataatgag
ccaacaggaagcaagtacatttctgacagcaagagacaaatcatggattcagcatttgtg
cctgaaagtggctgtcttgatttgctgcacagtgatacttatccattgcatctgtatact
ctccttgatccaaagttatctggaaatgaagagggtgacttctctgcagatcctgatgtt
gatgccagcaactatgatcagttcaataatatggatttcctgtgtacgatggaaaatgct
gaaaatgtggatgaatggtatctctgttccaataccagagaagcttatgctagaatagct
gaattagcagaatatgtgctcaaagatcagcaggagaagcaggtggaagacacttttgca
gggagccttttggatgaaatggctactgaaaacactgagaaatttaccgacataaaggtg
cagaaatgtcacaaacgaaccttcttaggctctgcagagggttgctctgaagcttcagaa
cccaaatacaagaaaattgtggaagtccctgcagtgtctgcagggaatggcaatttctta
gctatgcctctcaacagtcatccacctagatccacctcgcaaactaaccatcacgggtcc
ttttctgttcctgctaccaatgcgttggaaagaagtttcataattcctggatcttcagcg
ctggagtgtctacctgccggcgtgaaagggagccaagagaatacaggctttgcagatcct
cctcagcagatacttaacttcgttcttggaaatggcacatctgatgttataatatatcca
atgctgacttcttccacccaaacattgacatccccaagttttccagttagtttatgtggt
ttagaaatgttcaaagaagtccacgttcccataatttcttctgaagaaactttcaaaaga
ccaaagtcagtggaagctttctgtatatcacttatggattatttccaagatgtgtgcaaa
tctgtggccatggagcgtgaagtaactcttgatcacctgtttattgatggaacatttgtt
caaagccaaactgaaaccaagactgggaagaatagcataaaagcaatggaaaaggagctg
gtaacttgcggtctgcaagggaaggaaaaggcagcccttaaaagaagccaaatatttcaa
atcccaggaggtaaagactcagagactaaagtgattgttgtgctgggaaaagcaggaatg
ggcaaaagcattcttgttcagaagatctgccaggactggtccaatggagagttttctcaa
tttgagtttgcgttttggtttgactgcaaacaaataagcttgcctgagaaacgatacagc
ctgaaggatctgcttcttgaattttttgtaaaacctcaagagggaagcaaagagatcttt
gagtatatattgcaaaatcctactaaagtcctcctgctttttgatggttttgaagggttg
catgatcatgagaattttcctcgttgctcagccagtcagcctgaaaaagacttgtgcagt
ataaaggagctgctttcaggactcatccaaaagaagatactcaatggttgtactttatta
cttacagcaagaccaaaagacaaggtgtaccagtatgtgtccaaagtggataagactatt
gaaatagtaggattttcccctcagcagagagaattatacataaccaaatactttgaagga
ttaccctactgtgataatgcactgaaattaatcaaagagtgtgagtacttgttcagtcat
tgttacagccctcttatgtgtagatttgtttgttttctctgtgagacagtacttgaaatg
ggagacaaaagccttccttcaactcttactacagtcttcctgaaatttgttcagcaaaag
ataatatctatgaaaacagatgttacagccatgcgaaatcaagagagtcttgctacgtta
gcccgtatagcctggtatcttggagaaaagcaccaaaatgccgtgaaaagtaaccttctt
ccttctaaggaagttaaagagtttgctctgaaacatggatttttcctgccatttgcattc
cccagacattcagatagtgaagaagaggaatttgggagcacgttctctgattttgtcatt
cagaatttcttgggtgcgcttcaccttatgttagcagaagagatcaaggataaaagtcta
ataaagtacctgtcttttccatccaagaagaaaaaaccttataactggttagatttagtg
cctcgatttttggctggattgttgttcctgcaggacgacccctacttctgctccctttca
aatgaggatgtaaaacaatcaaccaagaagcagaaaacactcttgaaatatattagaagg
ctgcagataaatgagctctgtccggagaggttactcgatcttttacattgtatttatgaa
acacaaagcaattatcttttgcagcatgtggccttaaggctcaagacagacctgtctttt
ctgggcgtagttcttacaccacctgatgtccatgtactgcactatattttaaaaaggtca
agaaaagagttttccttggatttgtggaacagcagcattgacatgcaagggctaaaagac
ttggttggcctaaagaatgtggcatcgttcagggcctccctcagtgatacagtcaggctc
tggaaatctttagaacaaacaaaagactacgagctgctgagagcatcaacagagaaattt
gttcttgatccctttaaggcaaagacaatgaaggacatcagtgacctttcagaccttgta
gagatgcaggagaagatgatcaattgtgtgcaagatgcatctggttgcagcagctatgaa
attcctgccatcaaaaacctcagaaaactagaatttgcgctgggtccggtatgcggcctt
cagggattcctaaaacttgtggaaattcttgcagcctttccatcacttcagcatttagac
ctcgatgctctgagtgaaaatggcataggagatgaaggagcaaagagtctgtctgaagtc
tttccaaccctgacatcactggaaatactgaacttatcacagaataagataacagatgtg
ggtgcagagaaactagccacagctcttccttccttgtcttcattaaagacactaagctta
tacaataataacatttgtgattttggagcagaaaatcttgcgaaagttcttcctgcgatg
tcatccttaaaagtgctagacgttcaatataacaaaataactggtgttggagcccagcag
ctgactgacagcttacgaaaatgtccccatataaagaacttggtgatgtggaatcccacc
attccctatggagttctcgaacaccttcagcagctggactctaggatcagtgtgtag
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