KEGG   Larus michahellis (yellow-legged gull): 141750569
Entry
141750569         CDS       T11135                                 
Symbol
RFC5
Name
(RefSeq) replication factor C subunit 5 isoform X1
  KO
K10756  replication factor C subunit 3/5
Organism
lmic  Larus michahellis (yellow-legged gull)
Pathway
lmic03030  DNA replication
lmic03410  Base excision repair
lmic03420  Nucleotide excision repair
lmic03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:lmic00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    141750569 (RFC5)
   03410 Base excision repair
    141750569 (RFC5)
   03420 Nucleotide excision repair
    141750569 (RFC5)
   03430 Mismatch repair
    141750569 (RFC5)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:lmic03032]
    141750569 (RFC5)
   03036 Chromosome and associated proteins [BR:lmic03036]
    141750569 (RFC5)
   03400 DNA repair and recombination proteins [BR:lmic03400]
    141750569 (RFC5)
DNA replication proteins [BR:lmic03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    141750569 (RFC5)
  DNA Replication Termination Factors
   ELG1-RFC complex
    141750569 (RFC5)
Chromosome and associated proteins [BR:lmic03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    141750569 (RFC5)
DNA repair and recombination proteins [BR:lmic03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     141750569 (RFC5)
  Check point factors
   HRAD17(Rad24)-RFC complex
    141750569 (RFC5)
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 Rad17 RCF1-5-like_lid AAA_16 AAA_24 AAA_22 AAA_11 AAA_assoc_2 DEAD AAA_14 ResIII DUF815 RuvB_N AAA_5 AAA_30 AAA_19 DNAX_ATPase_lid PhoH TIP49 AAA_7 ATPase_2 TniB nSTAND3 Mg_chelatase Thioredoxin_6 bpMoxR Gp44_lid Hydantoinase_B AAA_28
Other DBs
NCBI-GeneID: 141750569
NCBI-ProteinID: XP_074462019
LinkDB
Position
13:complement(2491147..2509458)
AA seq 361 aa
MARAGGGNLPWVEKYRPQALSELVSHRDILSTVQRFISEDRLPHLLLYGPPGTGKTSTIL
ACAKQLYREREFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMT
QDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLQHVIQ
EEGVDVTEDGMKALVTLSSGDMRRALNILQSTTMAFGKVTEENVYTCTGHPLKSDIANIL
DWMLNQDFSTAYRKIMELKTLKGLALQDILTEIHLFVHRGRGSQGQLLGDPGRDSRPPPA
PADARRLLLSAVDFPPSVRIQLLIKMADIEYRLAAGTSEKIQLSSLIAAFQVTRDLIVAE
A
NT seq 1086 nt   +upstreamnt  +downstreamnt
atggcgcgagcgggcggcgggaacctaccgtgggtggagaaataccggccgcaggcgctg
tcggagctggtgtctcaccgggatatactcagcaccgtgcagcggttcatcagcgaggat
cggctcccgcaccttctcctctatggcccccccggtaccggtaaaacctccaccatcctc
gcctgtgccaaacagctctaccgggagcgggaattcggttccatggtgctggagctcaac
gcctccgatgaccggggcatcgacatcgtccgagggcccatcctgagcttcgccagcacc
aggaccatctttaagaaaggtttcaagctcgtcatcctggatgaagccgacgccatgacc
caggatgctcagaacgccctgaggcgagtgatcgagaagttcacggaaaacacccggttt
tgcctcatctgcaactacctctccaagatcatccccgccttgcagtcccgctgcacgcga
ttccgcttcggccccctcaccccggagctgatggtgccccggctgcagcacgtcatacaa
gaggagggggtggatgtgacggaggatgggatgaaggctctggtgaccctctcgagcggt
gacatgcgcagagccctcaatatcttgcagagcaccaccatggccttcggcaaggtgacg
gaggagaacgtctacacctgcacgggacaccccctcaagtcggacatcgccaacatcctc
gactggatgctgaaccaggacttttccaccgcctaccgcaaaatcatggagctgaagacg
ctgaagggcttggcgctgcaggacatcctcaccgagatccacctctttgtgcacagaggt
aggggctcgcagggtcagctcctgggtgaccctgggagggacagtcgtccccccccagcc
cccgctgacgcacgccgtctccttctctccgcagtcgatttcccaccctcggtccgcatc
cagctgctgatcaaaatggcagacatcgagtaccggctggctgctgggaccagtgaaaag
attcagctgagctccctcatcgcggctttccaagtcaccagggacctgatcgtggccgaa
gcctga

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