Lautropia mirabilis: NCTC12852_00722
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Entry
NCTC12852_00722 CDS
T05799
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
lmir
Lautropia mirabilis
Pathway
lmir03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lmir00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NCTC12852_00722 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lmir03021
]
NCTC12852_00722 (rpoB)
03400 DNA repair and recombination proteins [BR:
lmir03400
]
NCTC12852_00722 (rpoB)
Enzymes [BR:
lmir01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NCTC12852_00722 (rpoB)
Transcription machinery [BR:
lmir03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NCTC12852_00722 (rpoB)
DNA repair and recombination proteins [BR:
lmir03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NCTC12852_00722 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
VEH00386
LinkDB
All DBs
Position
1:899645..903760
Genome browser
AA seq
1371 aa
AA seq
DB search
MTYSFTEKKRIRKSFGHRRARAVQEVPYLLATQLESYAEFLQEGVPADQRKDVGLQAALK
SIFPISSHNDMARLEFVGYTLGQPAFDMKECQQRGLNFCAPLRARVRLVIMDREASKPTV
KEVKEQEVYMGEIPLMTPTGSFVINGTERVIVSQLHRSPGVFFEHDRGKTHSSGKLLFSA
RIIPYRGSWLDFEFDAKDILYFRIDRRRKMPVTILLKAIGMTPEQILAHFFVFDTFTLES
EGAKMELVPERLKGETARFDITDREGNVIVAKDKRINAKHIRDMEKAGLKLISVPDEFLL
GRAVATDIVDPETGEIVMRANDELTEDSLGRLRAANIHEFRTLYTNDLDAGPFISQTLRL
DDSADQISARIAIYRMMRPGEPPTEDAVEALFNRLFYNEDTYDLSRVGRMKFNSRVGREE
PTGPMTLEDDDIVAVIKLLVDLRNGKGEIDDIDHLGNRRVRCVGELAENQFRAGLVRVER
AVRERLGQAETENLLPHDLINSKPISAAIREFFGSSQLSQFMDQTNPLSEITHKRRVSAL
GPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYARLNEFGFLETPYRK
VENQKLTDQIDFLSAIEEGRYVIAQANAELDEEGRLTGELVSVRINGETQLVSADRVEYI
DVAPSQIVSVAASLIPFLEHDDANRALMGANMQRQAVPCLRPQKPLVGTGIERTCAVDSG
TVVTALRGGTVDYVDANRVVIRVNDEEATAGEVGVDIYNLVKYTRSNQNTNINQRPIVSK
GDRLAAGDVIADGASTDLGELALGQNMLIAFMPWNGYNFEDSVMISEKVVSDDRYTSIHI
EELSVLARDTKLGPEEITRDISNLSESQLARLDESGIVYIGAEVSAGDTLVGKVTPKGET
QLTPEEKLLRAIFGEKASDVKDTSLRVPSGMNGTVIDVQVFTREGITRDKRAQSIIDDEL
KRFRLDLNDQLRIVENDAFSRIERFLDGKEANGGPKKLAKGTVVTRDYLKDLDRYHWFEV
RLANEEDARWLEGMKDAIEQKRHQFDLAFEEKRKKLTQGDELPPGVLKMVKVYLAVKRRL
QPGDKMAGRHGNKGVVSRIVPIEDMPYMADGTPCDIVLNPLGVPSRMNVGQILETHLGWA
AKGVGLRIGEMLDRHVKVSELRRYLDKVYNDRGEKANLSELSDDELLAMANNLRDGVPFA
TPVFDGATEEEIHAALDLAFPSDDPRTEKLGFTPSKTQLILRDGRTGDPFDRPVTVGYMH
FLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYTLQEML
TVKSDDVTGRAKVYENMVKGEHAIDAGMPESFNVLVKEIRSLGIDIDLERA
NT seq
4116 nt
NT seq
+upstream
nt +downstream
nt
atgacctactcgttcactgaaaagaagcgcatccgcaagagctttggccaccggcgtgcc
cgtgccgtgcaggaagtgccttacctgctggccacgcagcttgaatcctatgccgagttc
ctgcaggaaggcgtgcccgccgaccaacgcaaggatgtggggctacaggcggcactgaag
tcgatctttccgatctcttcgcacaacgacatggcgcgtctggagttcgtcggctacacg
ctgggccagcctgccttcgacatgaaggagtgccagcagcgcggcctgaacttctgcgca
ccgctgcgcgcccgcgtgcgcctggtcatcatggaccgcgaggccagcaagcccacggtc
aaggaagtgaaggagcaggaagtctacatgggcgagatcccgctcatgacgccgaccggc
tccttcgtcatcaacggtaccgagcgcgtcatcgtctcgcagctgcatcgttcgcccggc
gtgttcttcgagcacgaccgcggcaagacccacagctccggcaagctgctcttctcggca
cggatcatcccctaccgtggctcgtggctggacttcgagtttgacgccaaggacatcctg
tacttccgtatcgaccgtcgccgcaagatgccggtgacgatcctgctgaaggccatcggt
atgacgccggagcagatcctggcccacttcttcgtcttcgacaccttcacgctggagtcg
gaaggcgccaagatggagctggtgcccgagcgtctgaagggtgagacggcccgtttcgac
atcaccgaccgtgaaggcaacgtgatcgttgccaaggacaagcggatcaacgccaagcac
atccgcgacatggagaaggccggcctgaagctgatcagcgtgccggacgagttcctgctg
ggtcgtgccgtggccaccgacatcgtcgatcccgagaccggcgagatcgtcatgcgcgcc
aatgacgagctgaccgaggacagcctgggtcgcctgcgcgcggccaacatccacgagttc
cgcacgctctacaccaatgacctggacgcgggcccgttcatctcgcagaccctgcgtctg
gatgactccgccgaccagatctcggcccgcatcgccatctaccggatgatgcgcccgggt
gagccgccgaccgaggacgcagtcgaggcactgttcaaccgcctcttctacaacgaggac
acctacgacctgtcgcgcgtgggccggatgaagttcaacagccgcgtcggccgcgaggag
cccacgggccccatgacgctggaagacgacgacatcgtggctgtcatcaagctgctggtg
gacctgcgcaacggcaagggcgagatcgacgacatcgaccacctgggcaaccgtcgcgtg
cgctgcgtgggcgagctggccgagaaccagttccgtgccggtctggtgcgcgtcgagcgc
gccgtgcgcgagcgtctgggccaggccgagaccgagaacctgctgccgcatgacctgatc
aacagcaagccgatcagcgccgccatccgcgagttcttcggttccagccagctgtcgcag
ttcatggaccagaccaacccgctgtcggagatcacccacaagcgccgtgtctcggccctt
ggcccgggcggtctgacgcgtgagcgtgccggcttcgaggtgcgcgacgtgcacccgacc
cactacggtcgcgtctgcccgatcgagacgcctgaaggtccgaacatcggtctgatcaac
tcgctggcgctctatgcccgcctgaacgagttcggcttcctggagactccgtaccgcaag
gtcgagaaccagaagctgactgaccagatcgacttcctgtcggccatcgaggaaggtcgc
tacgtcatcgctcaggccaacgccgagctggacgaggaaggccgcctgaccggcgagctg
gtgtcggtgcgcatcaacggcgagacccagctggtctcggccgaccgcgtggagtacatc
gacgtggcgccgtcgcagatcgtgtccgtggccgcctcgctgattccgttccttgagcac
gacgacgcgaaccgggcgctgatgggtgccaacatgcagcgtcaggccgtgccctgcctg
cgtccgcagaaaccgctggtcggtaccggcatcgagcgcacctgtgcggtggactcgggc
acggtcgtcaccgcgctgcgcggcggcaccgtcgactacgtcgatgccaaccgggtggtg
atccgcgtcaacgacgaggaagccacggcgggcgaagtgggtgtggacatctacaacctc
gtcaagtacacccgcagcaaccagaacaccaacatcaaccagcgtccgatcgtctccaag
ggcgaccggctggctgccggcgacgtgatcgccgacggcgcctcgaccgacctcggcgag
ctggccctggggcagaacatgctgatcgcgttcatgccctggaacggctacaacttcgag
gactcggtgatgatctcggagaaggtggtgtccgacgaccgctacacctcgatccacatc
gaggagctgtcggttctggcgcgtgacaccaagctggggcccgaggagatcacccgcgac
atctccaacctgtccgagagccagctggcccgcctggacgagtccggcatcgtctacatc
ggcgccgaagtctcggccggcgacacgctggtgggcaaggtcacgcccaagggcgagacc
cagctcaccccggaagagaagctgctgcgcgcgatcttcggcgagaaggcctccgacgtg
aaggacaccagcctgcgcgtgccttcgggcatgaacggcaccgtcatcgacgtgcaggtg
ttcacccgcgagggcatcacccgtgacaagcgggcgcagtcgatcatcgacgacgaactc
aagcgcttccgtctggacctgaacgaccagctgcggatcgtcgagaacgacgccttcagc
cggatcgagcgtttcctggacggcaaggaagccaatggcggacccaagaagctggccaag
ggcacggtcgtcacccgcgactacctgaaggatctggaccgctaccactggttcgaggtg
cgtctggccaacgaggaagatgcccgctggctggaaggcatgaaggacgccatcgagcag
aagcgtcaccagttcgacctggccttcgaagagaagcgcaagaagctcacccagggcgac
gagctgcccccgggcgtgctgaagatggtcaaggtctacctggccgtcaagcgtcgtctg
cagcctggtgacaagatggccggccgccacggcaacaagggtgtggtctcgcgcatcgtg
ccgatcgaggacatgccctacatggctgatggcaccccgtgcgacatcgtgctgaacccg
ctgggcgtgccgtcgcggatgaacgtgggccagattctggaaacccacctgggctgggct
gccaagggcgtgggcctgcgcatcggcgagatgctggaccgtcacgtgaaggtctccgag
ctgcgccgctatctcgacaaggtctataacgaccgcggcgagaaggccaacctgtccgag
ctgtccgacgacgagctgctggccatggcgaacaacctgcgggacggcgtgccgtttgcc
accccggtgtttgacggtgcgaccgaggaagagatccacgctgcactggatctggccttc
ccgtcggatgacccgcggaccgagaaactgggcttcacgcccagcaagacgcagctcatc
ctgcgtgacggccgcaccggcgatccgttcgaccggccggtcacggtgggctacatgcac
ttcctgaagctgcaccacctggtcgacgacaagatgcacgcccgctccaccggtccgtac
agcctggtgacccagcagccgctgggcggcaaggcccagttcggtggccagcgtttcggc
gagatggaggtctgggcactggaagcctatggtgcctcctacacgctgcaggagatgctg
acggtcaagtccgacgacgtgaccggtcgtgcgaaggtctacgaaaacatggtcaagggc
gagcacgccatcgacgccggcatgccggaatccttcaacgtgctggtcaaggaaattcgc
tcgctcggcatcgacatcgatctcgaacgcgcctga
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