Lautropia mirabilis: NCTC12852_00723
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Entry
NCTC12852_00723 CDS
T05799
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
lmir
Lautropia mirabilis
Pathway
lmir03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lmir00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NCTC12852_00723 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lmir03021
]
NCTC12852_00723 (rpoC)
03400 DNA repair and recombination proteins [BR:
lmir03400
]
NCTC12852_00723 (rpoC)
Enzymes [BR:
lmir01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NCTC12852_00723 (rpoC)
Transcription machinery [BR:
lmir03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NCTC12852_00723 (rpoC)
DNA repair and recombination proteins [BR:
lmir03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NCTC12852_00723 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Biotin_lipoyl_2
Baculo_ME53
Motif
Other DBs
NCBI-ProteinID:
VEH00388
LinkDB
All DBs
Position
1:903791..908119
Genome browser
AA seq
1442 aa
AA seq
DB search
MKALLDLFKQVEESDHFDAIRIGLASPDKIRSWSYGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELASPVAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAYVVVEPGMTPLKRNQLLTEDDFLAKTEEYGDEFVAAM
GAEGVRELLKSIDVDREVDRLREEIQVTSSEAKVKKIAKRLKVLEGFQRSGIRPEWMVME
VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPEIIVRNEKRMLQ
ESVDSLLDNGRRGKAMTGANKRALKSLADMIKGKGGRFRQNLLGKRVDYSGRSVIVVGPQ
LKLHQCGLPKLMALELFKPFIFNKLEAMSAATTIKQAKKMVDTQEPIVWDILEEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQMEA
RALMLASNNVLFPSNGEPSIVPSQDIVLGLYYATRAKVNGKGEGMYLADIKEVQRAYDNG
EVELGTKITVRLHEYERIGDNEFRPHFKRFETTVGRALLSEILPKGLPFDLMNRALKKKE
ISRLINASFRRCGLRATVILADQLMQNGFRLATRGGISIAIDDMLVPPSKPQILAAAEKE
VKEIEQQYTSGLVTQGERYNKVVDIWSKAGDQVAKAMMDQLATEDVVNREGLVQKQESFN
AIYMMADSGARGSATQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEHDCGTSNGVAMRALVEGGEVIEPLRDRVL
GRVTAVDVINPETQETAIPAGELLNEDLVEKIEQLGIDEVRVRTPLTCDVRYGLCAKCYG
RDLGRGVLVNTGESVGIIAAQSIGEPGTQLTMRTFHIGGAASRAAVASSVETKSNGTARF
TAAMRYITNAKGELIVISRSGEVMITDDNGRERERHKIPYGATLHVHDGQALTAGSQLAS
WDPLTRPIISEYGGTVRFENVEEGVTVAKQVDEVTGLSTQVVIDAKRRGAGAKNVRPTMK
LINEAGEEVKIAGTDHSVQIGFPVGALITVRDGQQVAVGEVLARIPQESQKNRDITGGLP
RVAELFEARSPKDAGMLAEVTGTVSFGKDTKGKQRLVITDLDGNAHEFLIPKEKHVLVHD
GQVVNKGEMIVDGPADPHDILRLLGIEALSRYIVDEVQDVYRLQGVKINDKHIEVIVRQM
LRRVVVTAPGGTNFIVGEQVERSELLDATDKMNDEGKLPPSYENILLGITKASLSTDSFI
SAASFQETTRVLTEAAIMGKRDDLRGLKENVIVGRLIPAGTGLAYHKARHEKESVEAQEA
AALAAAEAAFAMPASSEPELVTAEESASSAAATAAALDLSALFGGPSTSSDETPAQPSGD
EG
NT seq
4329 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcattgctggatctcttcaaacaggtcgaggagagcgaccacttcgatgccatc
cgcatcggcctggcctctcccgacaagattcgctcctggtcctacggcgaagtcaagaaa
cccgagaccatcaactaccggaccttcaagcccgagcgtgacggcctgttctgcgccaag
atcttcgggcccatcaaggactacgagtgcctgtgcggcaagtacaagcgcctcaagcat
cgcggcgtgatctgcgagaagtgcggcgtggaagtgacgctggccaaggtgcgccgcgag
cgcatgggccacatcgagctggccagcccggtcgcgcacatctggttcctgaagtcgctg
ccgtcgcgtctgggcatggtgctggacatgacgctgcgcgacatcgagcgcgtgctgtac
ttcgaggcctatgtcgtggtcgagcccggcatgaccccgctcaagcgcaaccagctgctc
accgaggacgacttcctggccaagaccgaggagtacggtgacgagttcgtggccgcgatg
ggtgccgagggcgtgcgcgagctgctcaagtccatcgacgtggaccgcgaggtcgatcgc
ctgcgcgaggaaatccaggtcaccagctccgaagccaaggtcaagaagatcgccaagcgc
ctgaaggtgctggaaggcttccagcgctcgggcatccgccccgagtggatggtcatggaa
gtgctgccggtgctgccgcccgagctgcgtccgctggtgccgctggatggtggccgcttc
gccacgtccgacctgaacgacctgtatcgccgtgtcatcaaccggaacaaccgcctcaag
cgtctgctggagctgaaggcccccgagatcatcgtccgcaacgagaagcggatgctgcag
gaatcggtcgactcgctgctggacaacggccgccgtggcaaggccatgacgggcgccaac
aagcgtgcgctgaagtcgctggccgacatgatcaagggcaagggcggtcgcttccgtcag
aacctgctgggcaagcgcgtcgactactcgggccgttcggtcatcgtggtgggcccgcag
ctcaagctgcatcagtgcggtctgcccaagctgatggccctggagctgttcaagcccttc
atcttcaacaagctggaggcgatgtcggctgccaccaccatcaagcaggctaagaagatg
gtggacacgcaggagcccatcgtctgggacatcctggaagaagtcatccgcgagcatccg
gtcatgctgaaccgggcgccgacgctgcaccgtctgggcatccaggccttcgagccggtg
ctgatcgagggcaaggccatccagctgcacccgctggtctgcgccgccttcaacgccgac
ttcgacggcgaccagatggccgtgcacgtcccgctgtcgctggaagcgcagatggaagcc
cgcgccctgatgctggcctccaacaacgtgctgttcccgtccaacggcgagccgtcgatc
gtgccgtcgcaggacatcgtgctgggcctgtactacgccactcgtgccaaggtcaacggc
aagggcgagggcatgtacctggccgacatcaaggaagtgcagcgcgcctacgacaacggc
gaggtcgagctgggcacgaagatcaccgtgcgtctccatgagtacgagcgcatcggcgac
aacgagttccgcccgcatttcaagcgcttcgagaccaccgtcggtcgtgcgctgctgtcc
gagatcctgcccaagggcctgccgttcgacctgatgaaccgggcgctgaagaagaaggaa
atctcgcgcctgatcaacgcctcgttccgtcgctgcggtctgcgggccacggtcatcctg
gccgaccagctgatgcagaacggcttccggctggccacgcgcggtggcatctccatcgcc
atcgacgacatgctggtgccgccgtccaagccgcagatcctggcggccgccgagaaggag
gtcaaggagatcgagcagcagtacacctcgggtctggtgacccagggcgagcgctacaac
aaggtggtggacatctggtccaaggccggcgaccaggtggccaaggccatgatggaccag
ctggcaaccgaggacgtcgtcaaccgcgaaggtctggtgcagaagcaggagtcgttcaac
gccatctacatgatggccgactcgggcgctcgtggttcggccacgcagatccgtcagctg
gcgggcatgcggggcctgatggccaagccggacggctcgatcatcgagacgccgatcacg
gcgaacttccgcgaaggcctgaacgttctgcagtacttcatctccacccacggtgcccgt
aagggtctggccgacaccgcgctgaagaccgccaactcgggttatctgacccgtcgtctg
gtggacgtggcgcaggatctggtggtgaccgagcacgactgcggcaccagtaacggtgtg
gccatgcgtgcgctggtcgagggcggtgaggtcatcgagccgctgcgcgatcgcgtgctg
ggtcgtgtcacggccgtggacgtgatcaaccccgagacgcaggaaaccgccatcccggcc
ggtgaactgctgaacgaggacctggtcgagaagatcgagcagctgggcatcgacgaggtg
cgcgtgcgcaccccgctgacctgcgacgtgcgctatggcctgtgcgccaagtgctacggt
cgcgacctgggccgcggtgtgctggtcaacactggcgaatcggtcggcatcatcgccgcc
cagtccattggtgagccgggtacccagctgaccatgcggaccttccacatcggtggtgcg
gcttcgcgtgccgcggtcgccagctcggtggaaaccaagtccaacggtacggcgcgtttc
accgccgccatgcgctacatcaccaacgccaagggcgagctgatcgtcatctcgcgttcg
ggcgaggtgatgatcaccgatgacaacggccgcgagcgcgagcgccacaagatcccttac
ggtgccacgctgcacgtccatgacggtcaggcgctcaccgccggttcgcagctggccagc
tgggatccgctgacccgcccgatcatcagtgagtacggcggtacggtgcgcttcgagaac
gtcgaggaaggcgtgaccgtggccaagcaggtcgacgaggtcaccggtctgtccacgcag
gtggtcatcgatgccaagcggcggggtgcgggtgccaagaacgtccgtcccacgatgaag
ctgatcaacgaggcgggcgaggaagtgaagatcgccggcaccgatcactcggtgcagatc
ggcttcccggtgggcgcgctgatcaccgtgcgcgatggccagcaggtggccgtcggcgag
gtgctggcacgtatcccgcaggaatcccagaagaaccgggacattaccgggggtctgccg
cgggtggccgagctgttcgaggcccgttcgcccaaggacgccggcatgctggcagaggtc
accggtacggtctcgttcggcaaggacaccaagggcaagcagcgtctggtcatcaccgac
ctggacggcaatgcgcacgagttcctgatcccgaaagagaagcacgtgctggtgcacgac
ggtcaggtggtcaacaagggcgagatgatcgtggacggcccggccgatccgcacgacatc
ctgcgcctgctgggcatcgaggcgctgtcgcgctacatcgtggacgaggtgcaggacgtc
taccgactgcagggcgtgaagatcaacgacaagcacatcgaggtgatcgttcgccagatg
ctgcgtcgtgtggtcgtcaccgcaccgggcggcaccaacttcatcgtgggcgagcaggtc
gagcgcagcgagctcctggatgccaccgacaagatgaacgacgaaggcaagctgccgccg
tcgtatgaaaacatcctgctgggcatcaccaaggcctcgctgtccaccgactcgttcatc
tcggcggcttccttccaggaaaccacccgggtgctgaccgaggcggccatcatgggcaag
cgcgacgacctgcgtgggctgaaggagaacgtcatcgtcggtcgcctgatccccgcaggt
acgggtctggcctaccacaaggcacgtcacgagaaggaatcggtcgaggcccaggaagcc
gccgcactggcagccgccgaagcagccttcgccatgcctgcgtcgtccgagcccgagctg
gtgacggccgaggaaagtgcgtcgtcggccgccgccaccgcggctgcgctggatctgagc
gcactgttcggcggaccgtccacctcgtcggacgagaccccggcacagccttccggcgac
gagggctga
DBGET
integrated database retrieval system
