Labrus mixtus (cuckoo wrasse): 132953871
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Entry
132953871 CDS
T10666
Symbol
xab2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
lmix Labrus mixtus (cuckoo wrasse)
Pathway
lmix03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lmix00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132953871 (xab2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lmix03019
]
132953871 (xab2)
03041 Spliceosome [BR:
lmix03041
]
132953871 (xab2)
Messenger RNA biogenesis [BR:
lmix03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
132953871 (xab2)
Spliceosome [BR:
lmix03041
]
Complex B
Other components
Prp19-related factors
132953871 (xab2)
Complex C
132953871 (xab2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
TPR_2
TPR_12
TPR_8
TPR_15
TPR_16
ARM_TT21_C
ARM_TT21
TPR_MalT
NRDE-2
SNAP
LTN1_E3_ligase_6th
TPR_1
Motif
Other DBs
NCBI-GeneID:
132953871
NCBI-ProteinID:
XP_060882205
LinkDB
All DBs
Position
20:complement(2110755..2118789)
Genome browser
AA seq
847 aa
AA seq
DB search
MPSLNGKPDVMFEDDDLPYEEEIIRNPYSVKCWMRYIEFKQNGSKSTLNMIYERALKELP
GSYKLWYNYLRERRKQVKGKCITEPTFEEVNNCHERALVFMHKMPRIWLDYCQFLVGQCK
ITRSRQTFDRALRALPVTQHPRIWPLYLRFVRNLPLPETAIRVYRRYLKLSPENAEDYID
YLRSVGRLDEAAVRLAAVVNDESFVSKEGKSNYQLWHELCDLISQNPDKVTSLNVGAIIR
GGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAILTVVTVRDFTQVFDSYAQFEES
MIAAKMETTAEMGQDEEDDTDMELRLARFEQLIARRPLLLNSVLLRQNPHNVHEWHKRVK
LYEGNPRQIINTYTEAVQTVDPMKATGKPHSLWVSFAKFYEENEQLDDARTIFEKATKVN
YKQVDDLAAVWCEYGEMELRHENYDQALRILRKATANPSKKAEYFDASEPVQNRVYKSLK
VWSMLADLEESLGTFQSTKAVYERIIDLRIATPQIIINYAMFLEEHNYFEESFKAYERGI
ALFRWPNVYDIWNTYLTKFIDRYGGKKLERARDLFEQALDGCPAKFAKTIYLLYAKLEEG
YGLARHAMAVYERATQAVDTGEQHQMYNIYIKRAAEIYGVTYTRAIYQKSIEVLPDEHAR
DMCLRFADMESKLGEIDRARAIYSYCSQICDPRVTAHFWQTWKEFEIRHGNEDTIREMLR
IKRSVQATYNTQVNFMSSQMMKAITSSTGTVSDLAPGQMGIDDMKMLEQKAQLIAAEAEQ
DKPKPKEKILFVRSDTSRSELAELSKQANPDEIDIDDEDDDDNQGPEEVQLEQKSVPTAV
FGGLKED
NT seq
2544 nt
NT seq
+upstream
nt +downstream
nt
atgccttccttaaacggaaaaccggatgttatgtttgaggacgatgatcttccgtatgaa
gaggagattattaggaacccttactccgtcaagtgctggatgcgttacattgaattcaaa
cagaatggatcaaagtctaccctcaacatgatttatgagcgggctctcaaagaactacct
ggcagctataagctgtggtacaattacctgcgagagaggcggaagcaagtcaaggggaaa
tgtatcactgagccaacctttgaagaggtcaataattgccatgaaagggcactggtgttc
atgcacaagatgcctcgaatttggcttgattactgccagttccttgttggtcagtgcaag
atcacaagaagtcggcaaacatttgaccgtgcactcagagcacttcctgtaactcagcac
ccacgaatctggcctctgtatctgcgctttgtccgcaacctgcccctgccagaaacagcc
atcagggtgtaccgcaggtaccttaagctttctccagagaatgcagaggattacatagac
tacttaaggtctgttggacgcttggatgaggcagctgtgcggctagcagctgttgtcaat
gacgaaagctttgtgtccaaagagggcaagtccaactaccaactgtggcacgagttatgc
gacctgatctctcagaaccctgataaggtgacctctctgaatgtgggagccatcatcaga
ggaggcctcactcgcttcacagaccaacttggaaaactctggtgttctttagctgactat
tacatcaggagtggtcactttgagaaggcccgtgatgtgtatgaagaggctatcctgaca
gtagtaacagtgagagatttcacacaagtgtttgatagttatgcccagtttgaagagagc
atgatcgcagcaaagatggagactactgctgagatggggcaggatgaagaggatgacact
gacatggagcttagactagcccgctttgagcaactgatagcccggcgtcccctccttctg
aatagtgtactgcttcgacagaacccacataatgtccatgagtggcacaagcgtgtaaaa
ctctacgagggcaatccacggcagattatcaatacatacacggaggccgtacagactgtg
gatccaatgaaggcaacaggaaagcctcactctctctgggtttcatttgccaaattttat
gaggaaaatgagcaactggatgatgccaggaccatttttgagaaggctaccaaggtgaac
tacaagcaggtggatgaccttgctgcagtgtggtgtgaatatggagagatggagcttcgg
catgaaaactatgatcaagcactgcgcatactgaggaaagctacagcaaacccgtccaag
aaagctgagtactttgatgcatctgagcctgtccaaaaccgagtctacaagtccttgaag
gtctggtctatgcttgcagacctggaggagagcctgggcactttccaatctacaaaagct
gtgtatgagcgcattattgacctccgcattgccacaccgcagatcatcatcaattatgcc
atgttccttgaagaacacaactattttgaggaaagcttcaaagcatatgagcggggtatt
gctctcttcaggtggccgaatgtttatgacatctggaacacttacctcaccaagttcatt
gatcgttatggtggcaagaagctggaaagagcaagagatttatttgaacaagccctggat
ggttgccctgctaagtttgccaagaccatctatctgttgtatgccaagttggaggagggc
tatggattggcacgacatgccatggctgtctatgaacgagccacacaggccgtagacact
ggggagcagcatcaaatgtataatatctacatcaagagagcagctgaaatttatggagtc
acatataccagagcaatttaccagaaatctattgaggtccttcctgatgagcatgcgagg
gatatgtgtctgcgatttgctgacatggagagtaaactgggtgagattgatcgggcgaga
gcaatctactcctactgctcgcaaatctgtgacccgagggtgacagcacatttctggcag
acgtggaaagaatttgagatccgccatggaaacgaggacactattagagaaatgctgagg
atcaaacgcagtgtccaggccacatacaacacgcaggtcaactttatgtcctctcagatg
atgaaggccataacaagctccacaggcactgtgtcagatcttgctccaggccaaatggga
attgatgatatgaagatgttggagcagaaagcacagctgattgctgcggaggctgaacag
gataaaccaaagcccaaagagaagattctgtttgtcaggagtgacacctctcgcagtgag
ttggcagagctttctaaacaagccaatccagatgaaattgacatcgatgacgaggatgat
gatgacaaccagggaccagaagaggtgcaacttgaacagaagagtgtacccactgctgtc
tttggaggtcttaaagaggattga
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