Labrus mixtus (cuckoo wrasse): 132953986
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Entry
132953986 CDS
T10666
Symbol
ciita
Name
(RefSeq) MHC class II transactivator isoform X1
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
lmix Labrus mixtus (cuckoo wrasse)
Brite
KEGG Orthology (KO) [BR:
lmix00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
lmix01001
]
132953986 (ciita)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
lmix04054
]
132953986 (ciita)
Enzymes [BR:
lmix01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
132953986 (ciita)
Protein kinases [BR:
lmix01001
]
Serine/threonine kinases: Other
TAF1 family
132953986 (ciita)
Pattern recognition receptors [BR:
lmix04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
132953986 (ciita)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
LRR_6
LRR_4
LRR_14
AAA_16
nSTAND3
nSTAND_NTPase5
AAA_22
AAA
TsaE
SRP54
NLRC4_HD2
Motif
Other DBs
NCBI-GeneID:
132953986
NCBI-ProteinID:
XP_060882378
LinkDB
All DBs
Position
20:18895006..18912277
Genome browser
AA seq
1622 aa
AA seq
DB search
MAQFEEVLDRVRLALTWASPAEIQALLEGLVKERIISEAYGKSFNLHRLTESETANRLRA
DQSHSQRCTNNRPLSQDQLSQERKYGTLKCTESTCNQTTSESSPVNTRSGLQFHPLYNKF
QLDHGLILAPIDQDCRCSLADELTERLSGSKSKQEPVSDSVRINEGNLVDEKEWLEQLEQ
AARRIAVPLWQHWDQGRRRLLPLDPRTTIGWETRENKETGGEARCPFLNMEEETELSIAC
ETLDFYGEHFLGTEEEIESLTEGLCFSVSPRRAGWNPNDLDFSGALGHPLAVRVSADTKH
NTTYRLEDALNVSSEAERTETPEGLLCLPSHQQSIVPRRSLCTPEGTCSDALERSLHSHA
NPSMQLGVIDSTETFSKTSHGAKMCGNYGKTDLDENEAEGVLVDPHWGTMMQELEQDPFL
CPDLGELPDDLSEYLNEDCLTTIDTDVLFGDPWFSYVDELNTSSDVGKPADPPSPDGPQQ
RQEDKLTDKTNNRRKRQRVSRIQRRTDENTPSRPKRQRAAGRPKTKVVETESTVSQGSEP
SSPELASHSTTPQRVLHLQPSIRFITIPEAPRYHVVQTLSLSPPVIRLPISNTAATPTYV
FVPATSPPCKHKLPPLSPVDGAVVPVQMSSSPPGSLSDTASKAMSSPFASPVSPSNESSN
CNLSNCKEGNHLQSPPVLDISETVREYIQEAKSHMNQTCQAMEEGLSLTSHYVDVEVSQR
EILCSGKNTNKSLDKEMVLIGNIDQRKSLMGCSQIFEGLNGNKPIRYILLLGNTGMGKTT
LIRKLCVDWSRGCIPQFDFVFLLDGKALTLREPNHSLQTLLLNSSSFAPSCMDPEAVYSQ
ILAASKRVLIIFDGFDEVRDYETLLQTQEKDLVTSLQKDTKGQIYTIRQLYSAILQRVLL
PDCTLLLSTRPRGTANQLLRRTDSLVEMCGFNHIDVETYLSRYFTDPALRESALDYLKKC
SFLHLLCWNPGLCRLACLVLEQAKSLAELPRTLTGLCHQVLCQKLERDNGITHLKTEVQT
EISVPSVEESQTHPSSSSHTRTKPRSQVRTRSRTQPARKATKQKKKEEVDGEDMSGVGRD
ANGREKRELLTQLSSLAWEGVKANSSILPAGRTISAKLRALGHRIGLFLSYHLRRRQVVP
SEEREEKSRGKRKGEKMENRGRTESGGSVALDDLILFWANPFLQSYLAGVHLSLSRTVTD
RIFQQNLPFQSGPKWRRRCHREELELTQRFAVGLLFNNRTELQRLHSYTDTASRDIVNSK
QALLRTHLESLSHGDLSPAQVLEACHHVYEASFTRSDGNVDIASTTLVAHLAVNLPEVVT
FHGVPLNPSDVFTVQNVLDRGRSEGRSFSLDLEDSVLQLSGLRALVALNNINTYRASIAD
VITLWEELEQSGEEELLQGSVSKFKIHPLRATQVCHIEHLAKLVNIHMQKKLSDSSSQSD
SIFSEGVPAVKELQKLDFELGPEMSPLALPKLWELLPGLQNLQHLDLENSKVGDKGAEKL
ADALVSLCNLEILNLSQNCIGDHGVTKLAPTLRDLPKLHCLSLYSNVISDKGAESLAVIL
PHMRSLIELDVKYNKLTDVGAQSLGASLRNCKQMKTLRMWNQCIPCGVFERLQQQDNRIE
WH
NT seq
4869 nt
NT seq
+upstream
nt +downstream
nt
atggcccagtttgaggaagttctagacagagtgcgtctggctctgacctgggcttctcct
gctgagatccaagctctgctcgagggtttggtgaaggagcggatcatctcggaggcctat
ggcaagagctttaacctgcaccgacttactgagagcgaaacagccaacagactgcgagct
gatcaaagtcattctcaaagatgcaccaacaaccggcccctcagtcaagaccaactcagc
caggagaggaaatatgggacgttgaagtgtacagaatctacctgtaaccagacaacatcc
gagtcatcacctgtcaacacaaggtctgggcttcaatttcatccactatacaacaaattc
caactcgatcacggactcattttggcacccatcgatcaagactgccgatgcagcttagct
gatgaattgactgaacggctcagtggttcaaaatcaaaacaggaaccagtcagtgatagt
gttagaattaatgaggggaatttggtggatgagaaggagtggttagagcagctggagcag
gctgccaggaggatagctgtgccactgtggcaacactgggaccaaggacggaggcggttg
ctgcccctggaccctcgtacgactattgggtgggaaacacgtgaaaacaaagagacaggc
ggtgaagcacggtgccctttcttgaatatggaagaggaaacggagctttccattgcatgc
gagacacttgatttttatggtgaacactttttaggcacagaagaggagatcgaaagcctc
acagaaggcctctgtttctctgtttcacccagaagagctgggtggaacccaaatgatctg
gatttctctggggcattgggacatcctttggctgtgagagtatctgcagacacaaaacat
aacaccacatacagactggaggatgctcttaatgtctcctcggaggccgaaaggacagaa
acgccagagggactcctctgtttgccgagtcaccaacaaagcatcgttccacgtcgttct
ctctgtacacctgaaggcacgtgcagtgacgcgctagagaggtcattgcactctcatgca
aatccaagcatgcaattaggtgtaatagatagcacagaaacattttccaagacttctcac
ggtgcaaagatgtgtggcaactatggcaaaacagacttggatgagaatgaagcggaggga
gtcttggttgatccacactggggtaccatgatgcaggaattggagcaggacccgttcctc
tgtcctgatctgggagagcttccagatgatttatctgaatacctaaatgaggactgcctg
acgacgatcgacacagatgtgctcttcggcgatccatggttcagctatgttgatgaacta
aatacctctagtgacgttggcaagccagcagacccaccgagccctgacggaccccagcag
agacaggaggacaaactaacagacaaaactaataacaggagaaaaagacaaagggtttca
aggatacaacggcgcactgatgaaaacacgccatccaggccaaaaaggcaaagagcagca
ggtcgaccaaaaaccaaagtggtagagactgagtcaactgtcagccaaggatcagagccc
agttctccagagttagccagtcactccaccactccacagagagtcctccatctccaacct
tccattcgctttatcaccatcccagaggctcctaggtaccatgtagttcagacactgagt
ctctcacctccagttataagactgcccatctccaatacagctgctaccccaacttacgta
tttgttccagctacttcaccaccctgcaaacataaattgccacccctctctccagtggac
ggtgctgtagtaccagtccaaatgagctcatccccaccaggatctctgtcagacacagca
agcaaagccatgtcttccccttttgcttcacccgtctctcccagcaatgagtcttctaac
tgcaacttgtctaactgcaaggaaggaaatcacctacaatcacctcctgtccttgatatt
tctgagactgtaagagagtacattcaggaagccaaatcccacatgaaccaaacctgccag
gctatggaagagggccttagcctgacctcacattatgtggatgtggaagtgagccagaga
gaaattctttgttctggaaaaaatacaaacaagtccctggacaaggaaatggtcctcatt
ggaaacatagatcagagaaaaagcttgatgggttgtagtcagatcttcgaaggcttaaat
ggtaacaaacccatacgctacatattgctacttggcaatactggcatgggaaaaacaacc
ctgatcaggaaactgtgtgttgactggtccagaggctgcatcccacagtttgactttgtc
ttcttgttagatggtaaagcactaactctaagggagcccaaccatagccttcagactctc
ttgttgaactcctcctcctttgccccttcctgcatggaccctgaggcagtgtacagccaa
atacttgctgcttctaagagagtgctcatcatatttgatgggtttgatgaggtgcgggac
tatgaaactttactccagactcaggaaaaagacttggtgacatcattgcagaaagacacc
aaaggacagatctacacaataagacagttatactctgccatcctccagagggttcttctt
ccagactgcactcttctgctttcaacccgaccaagaggcaccgccaaccagttactcaga
cgaacggacagccttgtggagatgtgtggcttcaaccacatagatgtagagacatatttg
tcccggtacttcacagatcctgcccttagagaatctgctttggactacttaaaaaaatgc
agctttctgcatctcctctgttggaacccgggactatgccggttggcctgcttggtttta
gaacaggccaaaagcttggccgaactacccagaactttaactggactctgccatcaagtg
ctatgtcagaaattggaaagggacaatgggatcactcatttaaagactgaagttcaaaca
gaaatatctgtgccatctgttgaagaatcccaaacacatccctcgagtagttcccacact
agaacaaaacccagatcacaagttcgcactcgctctcgcacccaaccagcaagaaaggca
acaaaacagaagaaaaaggaggaagtggatggagaggacatgagtggtgttggaagggac
gctaatggaagagagaagagagagttgctgacccagttgagttctttggcttgggagggg
gtcaaagcaaactcttccatcctcccagcagggcgtaccatatctgccaaactgagggca
ttaggccacaggatcgggctcttcctctcttaccacctgaggaggaggcaagttgtccca
agtgaggaaagagaggaaaaatcaagaggtaaacgaaaaggggaaaagatggaaaacaga
ggaagaacagaaagtggtggctctgttgcccttgacgatctcatcctcttctgggcaaat
cctttcctgcagagttacttggcaggagttcatttgtctctgtcaaggactgtaacagac
cgcatttttcaacagaacctccctttccaatctggtccaaagtggcgtcgacgatgtcac
agagaggagcttgagctaacgcaacggtttgcagttgggcttttgtttaacaaccggaca
gagctacagagacttcactcatacactgacacagcctcacgagatattgtgaacagcaag
caggctttattaagaacacaccttgaaagcctctctcatggtgacctgagtcctgcccag
gtgctagaagcttgtcaccatgtttatgaagcaagttttacccgtagtgatggtaacgtg
gacattgccagcacgacgttagttgctcaccttgcagtgaatcttccagaagtggttaca
tttcatggagttccactcaacccatcggacgtgttcaccgtgcagaacgttctggatagg
ggtagatctgaagggagaagtttctctttagatctggaggattctgtgttacagctttct
gggctgagagctctggtggcgctcaacaacatcaacacatacagggcaagcatcgctgat
gtcatcactttatgggaggagctagagcagagtggtgaggaagagctcctacaagggtca
gtttccaagttcaagatccaccctttgagagccacacaggtgtgtcacatagagcacctg
gctaagctggtgaacatccatatgcaaaagaagctgtcagacagttccagccaatcagat
tccatcttctcagagggagtaccagctgtcaaagagctacaaaagctggattttgagctt
ggcccagaaatgagtcccctggctcttcccaaattgtgggagctcctacctggtctacaa
aacctacagcacttggatctagagaacagcaaagtaggggacaaaggagcggagaaactg
gctgacgctttagtctcactctgtaacctggagatactcaatctgtcacagaattgtata
ggagaccacggggtgaccaaactggcaccaaccctgagagatctgcccaaactgcactgt
ttaagtctctacagtaatgtgatttctgacaaaggggcagagagtttagcagtcatcctc
ccacacatgaggtccctcatagaactcgacgtgaagtataacaagctaacagatgttgga
gcacagagtctgggtgcgagtctgaggaactgtaaacaaatgaaaactctgaggatgtgg
aaccagtgtattccatgtggagttttcgagcggctccagcagcaggacaacaggatcgaa
tggcattag
DBGET
integrated database retrieval system
