Labrus mixtus (cuckoo wrasse): 132955009
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Entry
132955009 CDS
T10666
Symbol
smarcd2
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2
KO
K11650
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
lmix Labrus mixtus (cuckoo wrasse)
Pathway
lmix03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
lmix00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
132955009 (smarcd2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lmix03021
]
132955009 (smarcd2)
03036 Chromosome and associated proteins [BR:
lmix03036
]
132955009 (smarcd2)
Transcription machinery [BR:
lmix03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
132955009 (smarcd2)
Chromosome and associated proteins [BR:
lmix03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
132955009 (smarcd2)
PBAF complex
132955009 (smarcd2)
GBAF(ncBAF) complex
132955009 (smarcd2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIB
SWIB_eIF2D
Motif
Other DBs
NCBI-GeneID:
132955009
NCBI-ProteinID:
XP_060883592
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Position
21:complement(11907901..11918080)
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AA seq
506 aa
AA seq
DB search
MASRGFSGPPMNPNLHPMNVGHAAGVRMPGMPQAPAGYPRSMNNAPQYPQRSGMPPGRVG
GPMGSMGGQLPGPSYGGGNMSMRPGMGPLSMDPSRKRFLHQHQQQQQQQQQPEGLGGLRR
GPKRRKMADKVLPQRIRDLVPESQAYMDLLAFERKLDQTIARKRMEIQEAIKKPIMQKRK
LRIYISNTYTPSKPEGEEAEKVSSWELRVEGKLLEEPGKQKKKFSSFFKSLVIELDKELY
GPDNHLVEWHRMPTTQETDGFQVKRPGDVNVKCTLLLMLDHQPPQYKLDPRLARLLGVHT
QTRASIMQALWLYIKNNKLQDSHEKEYINCNRYFRQIFGCSRMRFSEIPMKLAGLLQHPD
PIIINHMISVDPTDQKKTACYDIDVEVDDPLKGQMNSFLSSTTNQQEIAALEMKIHETIE
YINQLKIERDFMLSFSNTPQDFIQDWLKSQSRDLKLMTDVTGNPEEERRTEFYQAPWVPE
AVGRYVFSKVQQRRQELEQVLGIRLT
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atggcatcaagaggtttctcgggtcctccgatgaatccgaatctgcaccccatgaacgtg
gggcatgctgcgggcgtgaggatgccaggcatgccgcaagctccagcgggatatccgcgc
agcatgaacaacgctccccagtatccacagcgctcagggatgccacccggcagagtaggg
ggccccatggggtcgatggggggtcagctgcctggtccttcttacggcggtgggaacatg
tccatgcggccaggcatggggcccctgagcatggacccctcaaggaagaggttccttcat
cagcatcaacagcagcagcagcagcagcagcagccagaggggctggggggcctcagacga
ggtccaaaaagacgcaagatggctgacaaagttctcccacagaggatccgagacctggtc
cccgagtctcaggcctacatggatctccttgccttcgagaggaaactggatcagaccatc
gcccggaagcgtatggagattcaggaggccatcaagaagcccattatgcaaaaacgaaag
ctcaggatctacatttccaacacatacaccccaagcaagccggaaggcgaggaggccgag
aaggtgtcctcctgggagctgagagtggagggaaaactcctggaggaacctggaaagcag
aagaagaagttttcctctttcttcaaaagtctggtgatcgagctcgataaggagctctac
ggacctgacaaccacttagtcgagtggcacagaatgcccaccactcaggagacggatggt
ttccaggtcaaacgtcccggcgatgtcaatgtcaaatgcaccctcctgctcatgctggac
caccagccacctcagtacaaactggacccgcggctggctcgccttctgggtgtgcacacg
cagacgcgggcgagcatcatgcaagctctgtggctctacatcaagaacaacaagctgcag
gatagtcacgagaaggagtacatcaactgcaaccgctacttcagacagatatttggctgt
tcccgcatgaggttctctgagatccccatgaaactggccggcctgctgcagcaccctgac
cccatcatcatcaatcacatgattagtgtggaccccacagaccagaagaagacggcgtgc
tatgacatcgatgtggaggtggatgaccctctgaagggccaaatgaacagtttcctgtcc
tctacaaccaaccagcaggagattgctgctctggagatgaagattcatgagaccatcgag
tacatcaaccagctgaagatagagagagacttcatgctgagcttcagcaatactccacag
gacttcatccaggactggctcaagtctcagagcagagatctgaagttgatgaccgatgtg
acgggaaacccagaggaggagaggaggaccgagttctaccaggcgccctgggtacctgag
gcagtgggccgatatgttttctcaaaggtgcagcagagaagacaagagctggagcaggtg
ttgggaatccgactcacctaa
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