Labrus mixtus (cuckoo wrasse): 132955533
Help
Entry
132955533 CDS
T10666
Name
(RefSeq) ATP-dependent RNA helicase DHX8 isoform X1
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
lmix Labrus mixtus (cuckoo wrasse)
Pathway
lmix03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lmix00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132955533
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lmix03041
]
132955533
Enzymes [BR:
lmix01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
132955533
Spliceosome [BR:
lmix03041
]
Complex C
Other components
Step II factors
132955533
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
Helicase_C
WHD_HA2
DEAD
AAA_22
GIPC1_GH2
AAA_19
nSTAND3
T2SSE
AAA_16
Flavi_DEAD
PhoH
Sigma54_activ_2
TsaE
ABC_tran
Motif
Other DBs
NCBI-GeneID:
132955533
NCBI-ProteinID:
XP_060884390
LinkDB
All DBs
Position
21:3542898..3553439
Genome browser
AA seq
1220 aa
AA seq
DB search
MADVGVDELSQLEYLSLVSKVCTELDNHLGISDKDLAEFVIDLAEKQPSFDGFKELLLKN
GAEFTDSLISNLLRLIQTMRPPSKASTSKASEALDKPKTEKDKLKELFPALCRANDPAPK
KLLDEDDVKVAADAMKELEMFMPSVSGTETKNGKSRSEKSKRHSRSRSRSRDRDRHRDRD
RDRDRDRDRKRRHRSRSRSRSRSRSRDRERHRERDRDRDRDRGKRKDKSSRWSERSPSPK
KDADSDRWKDKHVDRPPPEEPSVGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELR
REGRVANVADVVSKGQRVKIKVLSFTGSKTSLSMKDVDQETGEDLNPNRRRNVGPDGGEE
ISMRNPDRPSNMNLGNAPELEQDDTLERKRLTKISDPEKWEIKQMIAANVLSKEEFPDFD
DETGILPKVDDEEDEDLEIELVEEEPPFLRGHTKQSMDMSPVKIVKNPDGSLSQAAMMQS
ALAKERRELKQAAREAEMDSIPMGLNKHWVDPLPDADGRQIAANMRGIGMMPNDIPEWKK
HAFGGNKASYGKKTQLSILEQRESLPIYKLKEQLIQAVHDNQILIVIGETGSGKTTQITQ
YLAEAGYTTRGKIGCTQPRRVAAMSVAKRVSEEYGCCLGQEVGYTIRFEDCTSPETVIKY
MTDGMLLRECLIDSELGQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRTDMKLIVTSATL
DAVKFSQYFYEAPIFTIPGRTYPVEVLYTKEPETDYLDASLITVMQIHLTEPPGDILVFL
TGQEEIDTACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFDPAPPGSRKVVIATN
IAETSLTIDGIYYVVDPGFVKQKVYNSKTGIDQLVVTPISQAQAKQRAGRAGRTGPGKTY
RLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPMETLITAMEQ
LYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQNVFYR
PKDKQALADQKKAKFHQPEGDHLTLLAVYNSWKNNKFSNPWCYENFIQARSLRRAQDIRK
QMLGIMDRHKLDVVSCGKATVRVQKAICSGFFRNAAKKDPQEGYRTLIDQQVVYIHPSSA
LFNRQPEWVVYHELVLTTKEYMREVTTIDPRWLVEFSPAFFKVSDPTRLSKQKKQQRLEP
LYNRYEEPNAWRISRAFRRR
NT seq
3663 nt
NT seq
+upstream
nt +downstream
nt
atggcagacgtcggagttgacgagctttcgcagcttgagtatttgtctttggtgtccaag
gtctgcacggagctcgacaaccatctgggaataagtgacaaagatttagctgagtttgtc
atcgaccttgctgaaaaacaaccgagctttgatggatttaaagaacttttgctaaaaaat
ggagcagaattcacagattctctcatcagtaatttgctcaggctcattcagactatgcgg
cctccatccaaagcatctaccagcaaagcctctgaggctctggacaagcccaagacagaa
aaggacaagttaaaggagctgtttcccgcactgtgcagagcaaatgatccagcaccaaaa
aagcttctagatgaagatgacgtgaaagtagcagctgatgccatgaaagagctggagatg
tttatgcccagtgtgagcgggacagaaactaaaaacggcaagagcaggtcagagaagagc
aaacgccacagtcggagtcgcagtcgaagcagagacagggaccgacacagagaccgcgac
cgtgacagagatcgggacagggacagaaagagacggcatcgctctcgttcccggtccagg
tccaggtctcgctccagagatcgtgaacgccacagagaaagagacagagacagagacaga
gatcgcggcaaaagaaaggacaaatcttcacgctggtcggagcgctcgcctagtcctaaa
aaagacgccgactctgaccgctggaaggacaaacatgtggaccgccctccaccagaagag
ccctctgttggtgacatctacaacggcaaagtcaccagtatcatgcagtttggatgcttt
gttcagctggagggattaaggaaacgatgggagggtctggttcacatttccgagctgcgt
agagaaggtcgtgtggctaatgtggcagatgtcgtcagtaaaggccaaagagtcaagatc
aaggtgctctccttcactggatcaaagaccagcctcagtatgaaggatgtggaccaagag
acaggagaagacctgaaccccaacaggaggaggaacgtcggcccggacggaggggaggag
atctccatgaggaaccccgaccgaccgagcaacatgaacctgggcaacgccccggagctg
gaacaggatgacaccctggagcgcaagagactcaccaagatatctgacccagagaagtgg
gagatcaaacagatgatcgctgcaaacgttttgtccaaagaagagtttcccgattttgac
gatgagacgggaatccttcccaaagttgatgatgaagaggatgaggatttggaaatcgag
ctggttgaagaggagcctccgttcctgagaggacacaccaaacaaagcatggacatgagc
ccagtgaagatcgtcaagaatccagatggctccttgtctcaggcggccatgatgcagagc
gctctcgctaaggagagacgagagctgaagcaggcggctcgagaggcggagatggactcc
atccccatggggctcaataaacactgggtcgacccgctgccagatgctgatggtaggcag
attgcagccaacatgagaggcattggcatgatgcccaacgacatcccagagtggaagaag
cacgctttcggaggcaacaaggcgtcctacggaaagaagacccagctctccatcctggag
cagagggagagtctgcccatctacaagctgaaggagcagctcattcaggctgtccacgac
aatcagatcctcattgtgattggagagaccggctccggtaagaccacacagatcactcag
taccttgcagaggcgggttacaccaccagggggaagatcggctgtacgcagcctcgtcgt
gtggccgccatgtcggtcgccaagagagtctctgaggagtacggttgctgtctgggacaa
gaggtgggttacacgatccgttttgaagactgcaccagccctgagacggtgatcaagtac
atgacagacggtatgctgttgagggagtgtctgatcgactctgaactgggccagtacgcc
atcatcatgttggacgaagctcacgagcggacaatccacaccgacgtcctctttggtttg
ctcaaaaagacggtacagaaacgcacagacatgaagttaatcgtcacatcagctactctg
gacgccgtgaagttctctcagtatttctatgaagctcccatcttcaccatcccaggacga
acgtatccagtggaggtcctctacaccaaagaacctgagaccgactacctggatgccagt
ctcatcacggtcatgcagatccatctgacagagcctccaggtgacatcctggtgtttctg
acgggtcaggaggagatcgacacggcctgtgagatcctgtatgagaggatgaagtctctg
gggcctgatgtccctgaactcatcatcctgcctgtttattccgctctgcccagcgagatg
cagaccaggatctttgacccggctccacccggcagcagaaaggtcgtcattgccaccaac
attgcagagacgtctctgaccatcgatggaatctactacgtggttgatcctggctttgtc
aaacagaaggtgtacaactctaagaccggcattgaccagctggtggtgactcccatctca
caggctcaggccaagcagagagcaggtcgagccggcagaacgggtccaggaaagacttac
agactctacacggagagagcctacagagacgagatgctcacaaccaacgtgcccgagatc
cagaggactaacttggccagcactgtgctgtctctgaaggcgatgggcatcaacgacctc
ctgtctttcgacttcatggacgctcctcccatggagactctgatcacggccatggagcag
ctctacactctgggcgctctggatgacgaaggtttactcacacggctcgggagaaggatg
gctgagtttcctctggagcccatgctgtgtaagatgctgatcatgtccgtccatctgggc
tgcagtgaagagatgctcaccatcgtctccatgctgtctgtgcagaacgtcttctacagg
cccaaggacaagcaggccttggccgaccagaagaaggccaagtttcaccagcctgaggga
gaccacctcacactgctggccgtctacaactcctggaagaacaacaagttctccaacccc
tggtgctacgagaacttcatccaggcccgctcgctgcgcagagctcaggacatccgcaaa
cagatgctgggaatcatggacagacataagctggatgtggtttcttgtgggaaggcgacg
gtcagagtccagaaagccatctgcagtggtttcttcagaaacgcagccaagaaggatcct
caggagggctacagaacacttatagaccagcaggtggtttacatccacccctccagcgct
ctatttaatcgccagcctgagtgggtcgtatatcacgagttggtcctgaccacgaaggag
tacatgcgggaggtgaccaccatcgacccgcgctggctggtggagttttcccccgccttc
ttcaaagtgtccgaccccacacgcctcagcaagcagaagaaacagcagcgcctggagcct
ctgtacaaccgctacgaggagcccaacgcctggagaatctctcgcgccttcagacgccgc
tga
DBGET
integrated database retrieval system
