Labrus mixtus (cuckoo wrasse): 132955534
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Entry
132955534 CDS
T10666
Name
(RefSeq) ATP-dependent RNA helicase DHX8-like
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
lmix Labrus mixtus (cuckoo wrasse)
Pathway
lmix03040
Spliceosome
Brite
Enzymes [BR:
lmix01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
132955534
Spliceosome [BR:
lmix03041
]
Complex C
Other components
Step II factors
132955534
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
S1
HA2_N
DEAD
AAA_22
Flavi_DEAD
AAA_19
ABC_tran
GIPC1_GH2
nSTAND3
T2SSE
AAA_16
TsaE
PhoH
AAA_30
NB-ARC
Sigma54_activ_2
AAA_7
Motif
Other DBs
NCBI-GeneID:
132955534
NCBI-ProteinID:
XP_060884393
LinkDB
All DBs
Position
21:3554953..3566197
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AA seq
1194 aa
AA seq
DB search
MAASDEIKRLEYLSLVSKVCTELENHLGISEKDLAEFVISLAEKHPTFEDFKAVLSKNGA
DFTDTLTGNLLRLIHTMRPQPSTSKAHQSEFKPDREKGKLIEKYPALCKPDDPVWIIPPS
QPDKDDEHVAAAAMKELEMLMPNFSGTSSDNSSARPSQGDRGRGTEGQSGRKRSRSRSRD
REGEAVPKQRRKRVSRWSDHPPSPSRVVNNNNNNNNSNKEDKDSDRCRDRLVDRPPPEEP
VVGDIYIGKISSIMQFGCFVQLEGLRKRWEGLVHISELRKEGRIANVADVVSKGQKVKVK
VLSFTGTKASLSMKDVDQETGEDLNPNRRRNLDTGPGEEAMRNPDRPVEASMLELEENTT
ERKRLTKITDLEKWEVKQMIAANVLPREEYPEFDEETGILPKIDDDEDEDLDIDLVEEEP
PFLRGQTKWSTNMSPVKIVKNPDGSLSQAAMMQSALSKERRELKQAARAAEMDSIPTGLH
KNWIDPMPDYEGRQIAANMRGIGAMPLDLPAWKKYAFGGNQVSYGKKTEMSILQQRESLP
IFKLKEQLVQAVNDNQILIVVGETGSGKTTQITQYLAEAGYTARGKIGCTQPRRVAAMSV
AKRVSEEYGCRLGQEVGYTIRFEDCTCTETVIKYMTHGMLQRECLIDPDMSQYSLIMLDE
AHERTIHTDVLFGLLKKTIKKRKDLKLIVSSATLDAVKFSQYFFEAPIFTIPGRTFPVEV
LYTKEPETDYLDAGLITVMQIHLTEPPGDILVFLTGQEEIDTACEILYDRMKSLGPDVPE
LIILPVYSALPSEMQTRIFDPAPPGSRKVIIATNIAETSLTIDGIYYVVDPGFVKQIVYN
SKTGIDQLVVTPISQAQAKQRSGRAGRTGPGKCYRLYTERAYRDEMLTTNVPEIQRTNLA
STVLSLKAMGINDLLAFDFMDAPPMETLITAMEQLYTLGALDNEGLLTRLGRRMAEFPLE
PMLCKMLIMSVHLGCSEEMLTIVSMLSVQNIFYRPKDKQALADQKKTKFFQLEGDHLTLL
AVYNSWKNNKFSNPWCFENFIQARSLKRAMDIRKQMLSIMDRHKLDVVSCGKSSMRVQKA
ICSGFFRNAARKHPHDGYRTLIDQQVVYLHPSSTLFNRQPEWLVYHELVLTTKEYMREVT
TIDPRWLVEFAPAFYRVGDPTRLSRQKRQQKLEPLYNRYEEPNAWRISRAFRRR
NT seq
3585 nt
NT seq
+upstream
nt +downstream
nt
atggctgcttcagacgaaataaaacgtcttgaatatttatctctggtgtctaaggtgtgc
acggagctggagaatcatctgggaataagcgagaaagatttggctgaatttgttattagt
cttgctgaaaaacacccgacgtttgaggactttaaagcagttctgtctaaaaatggagca
gattttacagatacacttactggtaatttacttagacttattcacaccatgcggcctcaa
ccatccacaagtaaagctcatcagtcagagttcaaaccagacagagagaagggaaagctg
atagagaaatatcctgctttatgtaaaccagatgatcctgtgtggataattccaccaagc
cagccggataaagatgacgagcatgtcgcagcagcagccatgaaggagctggagatgctg
atgcctaacttcagtggaacaagcagtgataacagctcagcgaggccgtcgcaaggtgac
agaggcagaggtacggagggtcaaagtggacggaagagaagtcgctccagatccagagat
cgcgagggagaagcagtccctaaacaaagacggaaacgggtgtctcgatggagcgaccat
cctcccagcccaagcagagtcgtcaacaacaacaacaacaacaacaacagcaacaaggag
gacaaagattcggacagatgccgtgatagactcgtagatcgacctcctccagaggagccg
gttgtaggcgacatctatatcggcaaaatcagcagtataatgcagtttggctgttttgtg
cagctagaaggtctacgaaaacgctgggagggcctggtgcacatctcggagctgcgcaaa
gaaggacgcatagcaaatgtggcagacgtggtcagcaaaggtcaaaaagtaaaggtcaaa
gtgctctcgtttactggaaccaaagccagccttagcatgaaggatgtggaccaggagaca
ggcgaggacctgaacccaaaccggagaagaaacctggacactggacccggagaggaggcc
atgaggaacccggaccgccccgttgaagccagcatgctggagttagaggaaaacacaaca
gaacgcaaacgtctcaccaagattactgacctggaaaagtgggaagtaaaacagatgatt
gcagccaacgtgcttccaagagaagagtacccagaatttgacgaggagacgggaatcctt
cccaagatagatgatgatgaagatgaagatctggatattgatctggtcgaagaggaacca
ccatttctgagaggacagactaaatggagcaccaacatgagtccagtcaaaatagtcaag
aatccagatggctccctctcccaggcggccatgatgcagagcgctttatctaaggagagg
agagagctgaagcaggcggcgcgagcagcagagatggactcaatcccgaccggtctccac
aagaactggatagaccccatgcctgattatgaaggaaggcagatcgctgccaacatgaga
ggcatcggtgccatgcctctggatcttccagcgtggaagaaatacgccttcggagggaac
caggtgtcctacggcaagaagacagaaatgtccatcctgcagcagagagagagcctgccc
attttcaagcttaaggagcagctcgttcaggctgtcaacgacaatcagatcctcatcgtg
gttggagaaaccggctccggtaagaccacacagatcactcagtaccttgcagaggccggt
tacaccgccagggggaagatcggctgtacgcagcctcgccgtgtggccgccatgtcggtc
gccaagagagtctctgaggagtacggctgtcgtctaggccaagaggtgggctacaccatc
cgttttgaggactgcacctgcacagagacggtgatcaaatacatgacccacggcatgctg
caaagggagtgtttgatcgaccccgacatgagccagtactccctcatcatgctggatgag
gcccacgagaggacgatccacaccgatgtgctgtttggccttctcaaaaagacgataaaa
aaacgcaaagacttgaagctgatcgtgtcctcagctactctggacgccgtgaagttctcc
cagtatttctttgaagctcccatcttcaccatcccagggaggacttttccagtggaggtc
ctctacaccaaagaaccggagacggactacctggatgccggtctcatcacggtcatgcag
atccatctgacagagcctccaggtgacatcctggtgtttctgacgggtcaggaggagatc
gacacggcctgtgagatcctgtatgataggatgaagtctctgggtcctgatgtccctgaa
ctcatcatcctgcctgtttattccgctctgcccagcgagatgcagaccaggatctttgac
ccggctccacccggcagcagaaaggtcatcatcgccacaaacatcgctgagacgtccctg
accatcgatggaatctactacgtggtcgaccccggttttgtcaaacagatcgtctataac
tccaagacgggaatcgaccagctggtggtgactcccatctcacaggctcaggctaagcag
aggtcaggccgagcgggcagaacgggtccaggaaagtgttacagactctacacggagaga
gcctacagagacgagatgctcacaaccaacgtgcccgagatccagaggactaacttggcc
agcactgtgctctctctgaaggcgatgggcatcaacgacctcctcgccttcgacttcatg
gacgctcctcccatggagactctgatcacggccatggagcagctctacactctgggcgct
ctggataatgaaggtttactcacacggctcggaagaaggatggctgagtttcctctggag
cccatgctgtgtaagatgctgatcatgtccgtccatctgggctgcagtgaagagatgctc
accatcgtctccatgctgtctgtgcagaacatcttctacagaccaaaggacaaacaggcg
ctcgctgatcagaaaaagacaaagttcttccagctcgagggagaccacctcacactgctg
gcggtctacaactcctggaagaacaacaagttctccaacccctggtgcttcgagaacttc
atccaggctcgctccttgaagagggctatggacatccgcaaacagatgctgagcatcatg
gacaggcacaagttggacgtggtcagttgtggaaaatcgtcgatgcgggtccagaaagcc
atttgcagcggtttcttcaggaacgccgccaggaagcacccacacgatggctaccgtacc
ctgatcgaccagcaggtggtgtacctccacccctccagcacgctcttcaacaggcagccg
gagtggctggtgtaccatgagttggttctgaccaccaaagagtacatgcgggaggtgacc
accatcgaccctcgctggctggtggagttcgccccggccttctacagagtcggcgacccg
acgcgtctcagccgacagaagaggcagcagaaactggagcctctgtacaaccgctacgag
gaacccaacgcctggaggatctcccgcgccttcagacgccgctga
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