Labrus mixtus (cuckoo wrasse): 132956550
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Entry
132956550 CDS
T10666
Symbol
pdzrn4
Name
(RefSeq) PDZ domain-containing RING finger protein 4
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
lmix Labrus mixtus (cuckoo wrasse)
Brite
KEGG Orthology (KO) [BR:
lmix00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lmix04121
]
132956550 (pdzrn4)
Enzymes [BR:
lmix01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
132956550 (pdzrn4)
Ubiquitin system [BR:
lmix04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
132956550 (pdzrn4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
Motif
Other DBs
NCBI-GeneID:
132956550
NCBI-ProteinID:
XP_060886043
LinkDB
All DBs
Position
22:complement(10410765..10446614)
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AA seq
816 aa
AA seq
DB search
MGCNLCTLQKREEHYKLLYEIAQVNARDFSKVDHGEAVVEAIRRDPIVVQVLRRTPTRAT
ASVAHNHSGMPEDVCVVDVCTQTDITFEHIMALAKLRPATPPVPDICPFLLSDSCHSIHT
MEHEYYECPEYLSNTPAEVERTEEYEYEEVELCRKNSQEKLGLTLCYRTDDEEDTGIYVS
QVEPNSIAARDGRIKEGDRILQINGCEVQDREKAVALLSSEEVRSIILLVTRPEIQLEEE
VWLDDEQQQLVEELKMEILEERRKQKEHNFDRGDEIEEETTDTATYSSNNQDKDSGFGRS
TDSPEHQPLLARIHRRTPAHCLRERWRAEHPHTRRGTVVPPDAQGPRNPSKGHEGVISIR
NGGGGILGLENRFEQLLELKCQIRNGGECGVYSIRHSIECSLTEQAGGDADDVDDEDGGT
GVEQELRMLNEELRSIELECQSIMQAHQLRQTHQVDPSQSPSSPGRSPKDGHKRHGRLAD
IHEYPERLDSDKIREKDSSSAYNTAESARSTPLGMERSPDHSLQRHISITNQKNLRLASS
TPSSPIPIPKPQGTPKAVRPADPGPVISSSPDQSNPSRSESDPALPADDERCEKRGRARD
SRRGLPYGSTYQTTPYPGQGGSRQLQSYVQLLQQHSSLEYSQSQVSLLSLCRDPVHRGGR
PGEPRLEWKVKVRADGTRYVARRPARDRILRERALRIREERSGGMTTDDDAMSEMKMGRY
WSKEERKQHLARAREQRKRREFMQKSRLECLKEGPASGAEGRKEINILELSHKKMMKKRN
KKILDNWMTIQELMSHGARVPEGSKVHNAFLSVTTV
NT seq
2451 nt
NT seq
+upstream
nt +downstream
nt
atgggctgcaatttgtgcacattgcagaaacgggaggaacactacaaactgctgtatgag
attgcacaggtaaatgctcgagacttctccaaggtcgaccatggcgaggcagtggtggag
gccatcaggcgagaccccatcgttgttcaagttcttaggcggaccccaaccagagccacg
gcttctgttgcacacaatcacagtggaatgccagaagatgtgtgtgtggtggatgtttgc
acacagacagacatcaccttcgagcacatcatggcactggctaagctccggcctgcgact
ccacccgtccctgatatctgtccttttcttttgtctgacagctgtcattcaattcacacc
atggaacatgagtattatgaatgtccagagtacctgtccaataccccagcagaagtggag
aggactgaagagtacgagtatgaggaagtggagctgtgcaggaagaacagccaggagaag
cttggcttgacgctgtgctacagaactgacgatgaggaggacactggcatctatgtcagc
caggtggagccaaacagcatagcagcaagagatggacgcattaaagaaggagatcgtatt
ctacagataaatggctgcgaagttcaagacagagagaaagccgttgccttgctgtcaagt
gaagaagtaaggagcatcatacttctggtgacaagaccagaaattcagctggaggaggag
gtatggctggatgatgagcagcagcagcttgtagaggagctgaagatggagatcctagag
gagagaaggaagcagaaggagcacaactttgacaggggagatgagattgaagaagagaca
acagacacagcaacctattcctccaacaatcaagacaaagacagtggctttggacgcagt
acagacagtccagagcaccaacctcttctagctagaattcacaggaggaccccagcacac
tgccttagggaacgatggcgggcagagcatccacacacaagacgagggactgtagtgccg
ccggacgctcagggtccaaggaacccgtcaaaaggccatgaaggggtaatcagtattcgc
aatggcggaggaggaattctagggttagagaatcgctttgagcaactccttgagctcaaa
tgtcaaatccgtaatggaggagagtgtggggtgtactccatccgacacagtatagagtgt
agtctcactgagcaagcgggaggggatgcagatgatgtggatgatgaagatggaggtaca
ggagtggagcaggagttgaggatgctaaatgaagaactgcgtagcattgagcttgagtgc
cagagcatcatgcaggcacatcagctccgccagacccaccaggtggatccatcacagtct
ccttcctcaccaggaaggagcccaaaagatggacacaagcgacacggcaggttggccgac
atccatgaatacccagagagattggacagtgataagattagagagaaggacagctccagt
gcctacaacactgcggaaagtgcacggtcgacaccacttggtatggagagatctcctgat
cattctctacagagacacatcagcattaccaaccagaaaaacctcagactggcttcttcc
acaccgtccagccccattcctatcccaaagcctcaaggtacacctaaggctgtcagaccg
gcagacccagggcctgtgatctcaagtagcccagaccagagcaacccttcccgatccgag
tcagaccctgccctgccagcagacgatgagagatgtgagaagagaggtagagcaagagat
tccaggagggggcttccctatggttctacgtaccagacaaccccctatcctggccaggga
ggatccaggcaacttcagagctacgtccagctgctacaacagcactcatccctggagtat
tcccagagccaggtgagtctgctaagcctctgcagagatccagtgcaccgaggagggcgc
cctggggaaccccgtctggaatggaaagtcaaagtacgtgctgacggcacacgctacgtg
gcccgaaggcctgctcgtgaccgcatcctgagggaacgggcactaaggatccgggaggag
aggagcggaggcatgactacagatgacgatgcaatgagtgagatgaagatgggccgatac
tggagcaaagaggagaggaaacagcacctggcaagggccagggagcaaaggaagaggagg
gagttcatgcaaaagagccgtctagagtgtctaaaggaggggccggccagtggagctgaa
ggcaggaaggagattaatatcttggagctcagtcacaagaagatgatgaagaaacgaaac
aagaagatcctcgacaactggatgaccatccaggagctaatgagccatggtgcgagagtc
ccagagggctccaaagtacataacgccttcctctccgttacaactgtgtag
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integrated database retrieval system
