Labrus mixtus (cuckoo wrasse): 132956634
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Entry
132956634 CDS
T10666
Symbol
cpsf6
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 6 isoform X1
KO
K14398
cleavage and polyadenylation specificity factor subunit 6/7
Organism
lmix Labrus mixtus (cuckoo wrasse)
Pathway
lmix03015
mRNA surveillance pathway
lmix03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
lmix00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
132956634 (cpsf6)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
132956634 (cpsf6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lmix03019
]
132956634 (cpsf6)
Messenger RNA biogenesis [BR:
lmix03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
132956634 (cpsf6)
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GFIT
Motif
Pfam:
RSLD_CPSF6
RRM_1
PRP38_assoc
Motif
Other DBs
NCBI-GeneID:
132956634
NCBI-ProteinID:
XP_060886183
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Position
22:14278024..14295936
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AA seq
592 aa
AA seq
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MADGVDHIDIYADVEEEFSQEADYPVHEQIDLYDDVISPSANNGDAPEDRDYLDTLPSPG
GTEGGKSAPPNVVYTYTGKRIALYIGNLTWWTTDEDLTEAIRSIGITDVLEIKFFENRAN
GQSKGFALVCVGSEGSSRKLMELLSKRELHGQNPIVTPCNKQSLSQFEMQSRKSEECSEK
KGTQSGQMSGEGKAGPPGAGSRGGFPMGRGRGRFPGPPGPGGDRFPGPVGPGGPPPHFPG
SGMGPDLIRHQDGPLMDMSFNPFPPGGRNGSWRGRGGMQGPPRPPPGPPGPPGPPGPPPP
GQGLPPPLPGPPNRGDRPPPPVLFPGQFGQPPMGPMPPGPPPPGYGPPPGPPPPQQGPPP
PGPFPPRPPGPIGPPMALAPPPHMPGPPPGGPPPAPHVNPAFFPPPGNNNMPPNDRGGPP
GPNDPYGRPPPYERGDYGPGGREMEASRTPLSEAEFEEIMNRNRAISSSAISRAVSDASA
ADYGSAIETLVTAISLIKQSKVSADDRCKVLISSLQDCLHGIESKSYGSARRERSRERDH
SRSREKSRRHKSRSRDRHEDYYRERSRERDRHRERDRDRDREREREREYRHR
NT seq
1779 nt
NT seq
+upstream
nt +downstream
nt
atggcggacggtgtagatcacatcgatatctacgccgacgtagaggaggaattcagccag
gaagctgactacccagttcatgagcagatcgacctttatgatgatgtaatttccccatca
gccaacaatggtgatgctccagaagaccgtgactacctggacacactgccttcacctggt
ggcactgagggaggaaagagtgctcccccaaatgtggtttacacctacacaggcaaaaga
attgccctgtacataggaaatctcacatggtggacgacagacgaagaccttacagaagcc
atacgatcaataggtatcacagatgtgctggagatcaagttttttgaaaacagagccaat
ggacagtcaaaagggtttgcgctggtgtgtgttggctcagagggatcatcccggaagcta
atggagctgctgtcaaagagggagctccatggtcagaatcccattgtcacgccatgcaac
aaacagtccctcagccagtttgagatgcagtcacgcaaaagtgaggagtgctctgaaaaa
aaaggtacccagtcaggccagatgtctggggaaggtaaagctggtccccccggtgctggt
tctagaggaggttttccaatgggacgaggcagagggaggtttcctggacctcccggccca
ggaggagaccgcttccctggacctgttggtcctggagggccgccaccacatttccctggc
tcggggatgggaccagatctgattaggcaccaagatggccccctgatggatatgagtttc
aatcccttcccgccggggggcaggaacgggagctggcgcggcagaggtggaatgcagggt
cccccacgtccccctcccggtccacctggtccaccgggccctccaggacctccccctcct
ggccagggcctcccccctcccctccccggtcctccaaaccgcggtgataggccacctccc
ccagttctcttccctggtcagtttggccagcctccaatgggacccatgcccccaggaccc
cctcctccaggttacggccctccccctggtcccccaccccctcaacagggcccgccaccc
ccaggacccttccctcctcgccccccaggtcccattgggccccccatggctttggcgcca
cctcctcacatgcctggtcccccaccaggtggaccaccaccagcaccccatgtcaaccct
gccttctttcccccacctggcaacaacaacatgccccccaacgacagaggaggcccacct
ggaccaaacgacccatacgggcgccctccaccatacgaaagaggagactatggtcctgga
ggccgggagatggaggcatcacgaacgcctcttagcgaggctgaatttgaggagatcatg
aacaggaaccgagccatctcctccagcgccatttccagagcggtgtctgacgccagtgca
gctgactatggtagtgcaatagagaccctggttacagccatcagtctgattaagcagtcc
aaagtgtcagcagacgaccgctgtaaggtcctcatcagttctctgcaggactgtctccac
ggcattgagtctaaaagctacggctctgcccgacgagagcgttccagggaacgagaccac
agccgctcgagagaaaagagcagacgccacaagtcccgcagtcgtgacagacatgaggac
tattatcgagaacgcagccgggagcgggaccgccatcgcgagagggacagggacagagac
cgtgagagagagagggagagggagtaccggcatcgctaa
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