Labrus mixtus (cuckoo wrasse): 132956764
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Entry
132956764 CDS
T10666
Symbol
upf2
Name
(RefSeq) regulator of nonsense transcripts 2 isoform X1
KO
K14327
regulator of nonsense transcripts 2
Organism
lmix Labrus mixtus (cuckoo wrasse)
Pathway
lmix03013
Nucleocytoplasmic transport
lmix03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lmix00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
132956764 (upf2)
03015 mRNA surveillance pathway
132956764 (upf2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lmix03019
]
132956764 (upf2)
Messenger RNA biogenesis [BR:
lmix03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
132956764 (upf2)
mRNA cycle factors
P-body specific factors
132956764 (upf2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
132956764
NCBI-ProteinID:
XP_060886374
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All DBs
Position
22:20043603..20061906
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AA seq
1289 aa
AA seq
DB search
MTDVCYATSCSMPAERKRSVNMDEKDVCPFGGKDKEKERDGDRRPGSARDKAKDEAKMSG
KKDGGKEEKRKRLEEEKKKKEEKDRRKKEEEKQKAEEELKKKEEEEKKQQEEEEKKLQEE
EAKRQREEEAALLKEKEESHQLHQEAWERHQCRKDLRSKNQNASEGRPEEAFFSRLDSSL
KKNTAFVKKLRTLTEQQRDSLSNDFNSLNLSKYIGEAVSSVVEAKLKISDVGCAVHLCSL
FHQRYTEFAPLLLQAWKKHFEARKEEKAPNVSKLRTDLRFIAELTIVGLFTDKEGLSLIY
EQLKNIIGTDRETHTHVSVVISFCKHCGDDIAGLVPRKVKLAAEKFSLAFPPSEIISTEK
QQPFQNLLREYFTSLTKHLKKDHRELQNTERQNRRILHSKGELSEDRHKQYEEFATSYQK
LLANTQSLADLLDENMPDLPQDKTVQEEHGPGIDIFTPGKPGEYDLEGGIWEDEDARNFY
ENLVDLKAFVPAILFKDNEKSNQGKDKDEAKDGREGKDSATTTEELELELEALDITDEPL
ELEGPDEAENEELAKKLLDEQEQEDEEANTGSHLKLIVDAFIQQLPNCVNRDLIDKAAMD
FCMNMNTKSNRRKLVRALFTVPRQRLDLLPFYSRLVATLHPCMSDVAEDLCSMLKGDFRF
HIRKKDQINIETKNKTVRFIGELAKFKMFSKTDTLHCLKMLLSDFTHHHIEMACTLLETC
GRFLFRSPDSHLRTSVLLEQMMRKKQAQHLDARYVTMVENAYYYCNPPPVEKTVKKKRPP
LQEYIRKLLYKDLSKVTTEKVLRQMRKLSWQDPEVKSYLICCMVNIWNVKYNSIHCVANL
LAGLVAYQEDVGIHVVDGVLEDIRLGMEVNQPKFNQRRISSAKFLGELYNYRMVESAVIF
RTLFSFISFGINQDGSPSSLDPPEHLFRIRLVCTLLDTCGQYFDRGSSKRKLDCFLIYFQ
RYIWWKKSTEVWTKDHPFPIDIDYMISDTLELLRPKMRLSCSLEEATKQVTELEREVLVK
LGLAMEKDGRSSAMSEGEGLDEDDEDADDDEEGGAETEEQSGNESEMNEQEEDEGSENDE
EEREEEEEENTDYLTDSNKENETDEENNEVTIRGGGLKHVACAEDEDFIQALDKMMLENL
QQRSGETVKVHQLDVAIPLQLKSQLKKGSSGQPCIGEGDSDISDTMQFVMLTRKGNKQQY
KILNVPLSSHLAANHFNQQQAEQEERMRMKKLTLDINERQEQEDYQEMMQSLAQRPAPAN
TNRERRPRYQHPKGAPNADLIFKTGGRRR
NT seq
3870 nt
NT seq
+upstream
nt +downstream
nt
atgaccgatgtttgttatgctacaagttgcagtatgcctgctgaacgcaagcgctcagta
aacatggacgagaaagatgtttgccccttcggcggcaaggacaaagagaaggagcgagac
ggcgacagaagaccgggatctgctcgggacaaagcgaaagacgaggccaaaatgagcggt
aaaaaggacgggggcaaggaggagaagagaaagcgcctcgaggaagagaagaagaagaaa
gaggaaaaggatcgacgaaagaaggaggaggaaaaacagaaggcagaggaggagctgaag
aagaaagaggaggaggagaagaagcagcaggaggaggaggagaagaagcttcaagaggag
gaggccaaacgacagcgcgaggaagaggccgctctcctcaaggagaaggaggagagccat
cagctgcaccaggaggcctgggagcgccatcagtgcaggaaagaccttcgaagcaagaac
cagaacgcctcagagggtcggcccgaggaggcgttcttcagccgcctggactccagcctg
aagaagaacaccgccttcgtcaagaagctgcgcacgctcaccgagcagcagcgagactcg
ctctccaacgacttcaactcgctgaacctcagcaagtacatcggcgaggccgtgagctcc
gtggtggaggccaagctgaagatctccgacgtgggctgcgcggtccacctgtgctccctc
ttccaccagcgctacaccgagttcgctccgttgctgctgcaggcctggaagaaacacttt
gaggcgaggaaggaggagaaggcgcccaacgtgagcaagctgcgcacggacctgcgcttc
atcgccgagctcaccatcgtcggcctcttcacagacaaagaggggctctctctcatctac
gagcagctgaagaacatcatcgggacggaccgcgagacgcacacccacgtgtcggtggtg
atcagcttctgcaagcactgcggggacgacatcgccggtctggtcccccgcaaggtgaag
ctggccgccgagaagttcagcctggccttccctccgagcgagatcatcagcacggagaag
cagcagcccttccagaaccttctgagggagtacttcacttcactcaccaaacacctgaag
aaagaccaccgcgagctgcagaacacggagaggcagaacaggcggatcctgcactctaaa
ggggagctcagtgaggaccggcacaagcagtatgaagagtttgcaacttcctaccagaag
cttctggccaacactcaatccctcgccgatctgctggacgagaacatgccggatctgcct
caggacaagaccgtgcaggaggagcacggccccggcatagacattttcacgcctggtaag
cccggagagtacgacctagagggaggcatctgggaggacgaagatgctcgtaacttctac
gagaacctggtggacctgaaggccttcgttcctgccatcctcttcaaggacaacgagaag
agcaaccagggcaaagacaaggacgaagccaaagacggcagagaggggaaggactcggcc
accaccaccgaggagctggagctggagctcgaggctctcgacatcacagatgaacctctc
gagctggagggaccagacgaggcagaaaatgaagaactggcaaaaaaactgctggatgag
caagaacaagaggacgaagaggccaacacagggtcccacctgaagctcattgtggacgcc
ttcatccagcagctcccaaactgtgtcaacagagacctcatcgacaaggctgccatggac
ttctgcatgaacatgaacacaaagtccaacaggaggaaactcgtgcgagctctcttcact
gtccccaggcagaggttggatctcctgcccttctactcccgcctggtcgcgactcttcat
ccctgcatgtcggacgtggccgaggacctgtgctccatgctgaagggagacttcaggttt
catatccggaagaaggaccagatcaacatcgagacaaaaaacaaaacggtccgattcatc
ggggagctggccaagttcaaaatgttctcaaaaacagacacgcttcattgtctcaagatg
ctgctgtcagatttcacccatcatcacatcgagatggcctgcacgctgctggagacctgc
ggacgcttcctcttcagatcccccgactctcacctgcgtaccagcgtcttactggagcaa
atgatgcgtaagaagcaggctcagcatctggacgcccgctacgtcacgatggtggagaac
gcctactactactgcaaccctccgcccgtggagaagacggtgaagaagaagaggccgccg
ctgcaggagtacatccgcaagctgctctacaaagacctgtccaaggtgaccacggagaag
gtgctgcggcagatgaggaagctgtcgtggcaggaccccgaggtgaagagctacctgatc
tgctgcatggtcaacatctggaacgtcaagtacaacagcatccactgcgtcgccaacctg
ctggccggcctggtggcctaccaggaggacgtgggcatccacgtggtggacggcgtgctg
gaggacatccgactgggcatggaggtcaatcagccgaagttcaaccagcggcggatcagc
agcgccaagttcctgggcgagctctacaactaccgcatggtggagtccgccgtcatcttc
cgcaccctcttctccttcatctccttcgggatcaatcaggacggcagcccgagctcgctg
gaccccccggagcacctgttccgcatccgcctggtctgcaccctgctcgatacctgcggg
cagtacttcgaccgcggctccagcaagaggaagctcgactgtttcctcatctacttccag
cggtacatctggtggaagaagagcactgaagtctggaccaaggaccacccgttccccatc
gacatcgactacatgatcagcgacaccctggagctcctccggcccaagatgaggctcagc
tgctccctggaggaggccaccaagcaggtcaccgagctggagagggaggtgctcgtcaaa
ctgggtctagcgatggagaaagacggccgctccagcgccatgagcgaaggcgagggtctg
gacgaggacgacgaggacgccgacgacgacgaggagggcggcgccgagacggaggagcag
tcgggcaacgagagcgaaatgaacgagcaggaagaggatgaaggatctgagaacgacgag
gaggagagggaggaagaggaggaagagaacacagactacctgaccgactccaataaagaa
aatgaaacggatgaggagaacaatgaggtcaccatccgaggaggaggactgaagcacgta
gcctgtgccgaggacgaagacttcattcaggctctggacaagatgatgctggaaaacctg
cagcagcggagcggcgagacggtgaaggtgcaccagctggacgtggcgatcccgctgcag
ctgaagagtcaactgaagaaggggagctctggacagccgtgtatcggggagggagactcg
gacatctcggacacgatgcagtttgtcatgctgacgcgcaaaggcaacaaacagcagtat
aagatcctgaacgtccccctgtcgtcccacctggcggccaatcacttcaaccagcagcag
gcggagcaggaggagcgcatgaggatgaagaagctcacgctggacatcaacgagcggcag
gagcaggaggactaccaggagatgatgcagtctctggctcagcgtcccgctccggccaac
actaaccgcgagcgtcggcctcgctaccagcacccgaaaggcgctcccaacgccgacctc
atcttcaagaccggaggaaggagacgctga
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integrated database retrieval system
