Labrus mixtus (cuckoo wrasse): 132957297
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Entry
132957297 CDS
T10666
Symbol
smx5
Name
(RefSeq) smx5
KO
K12621
U6 snRNA-associated Sm-like protein LSm2
Organism
lmix Labrus mixtus (cuckoo wrasse)
Pathway
lmix03018
RNA degradation
lmix03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lmix00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132957297 (smx5)
09123 Folding, sorting and degradation
03018 RNA degradation
132957297 (smx5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lmix03019
]
132957297 (smx5)
03041 Spliceosome [BR:
lmix03041
]
132957297 (smx5)
Messenger RNA biogenesis [BR:
lmix03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
132957297 (smx5)
mRNA degradation factors
5'-3' decay
Lsm complex
132957297 (smx5)
Spliceosome [BR:
lmix03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
132957297 (smx5)
Complex C
U2 snRNP components
132957297 (smx5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
DYW_deaminase
Motif
Other DBs
NCBI-GeneID:
132957297
NCBI-ProteinID:
XP_060886540
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All DBs
Position
3:complement(7793273..7796026)
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AA seq
95 aa
AA seq
DB search
MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC
FIRGSVVRYVQLPADEVDTQLLQDAARKEAMQQKQ
NT seq
288 nt
NT seq
+upstream
nt +downstream
nt
atgcttttctactcgtttttcaagtccctggtggggaaggatgtagtggtggagctcaaa
aacgacctgagcatctgtggaactcttcattctgttgaccagtacctgaacatcaaactc
acagacatcagcgtcacagatcctgagaagtatccacacatgctgtcggtgaagaactgt
ttcatccgtggctccgtggtccggtacgttcagctgcctgcagatgaagtggacacacag
ctcctgcaggacgccgcacgaaaagaagccatgcagcagaagcagtga
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