Labrus mixtus (cuckoo wrasse): 132958395
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Entry
132958395 CDS
T10666
Symbol
col4a6
Name
(RefSeq) collagen alpha-6(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
lmix Labrus mixtus (cuckoo wrasse)
Pathway
lmix04382
Cornified envelope formation
lmix04510
Focal adhesion
lmix04512
ECM-receptor interaction
lmix04518
Integrin signaling
lmix04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
lmix00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
132958395 (col4a6)
04518 Integrin signaling
132958395 (col4a6)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
132958395 (col4a6)
09142 Cell motility
04820 Cytoskeleton in muscle cells
132958395 (col4a6)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
132958395 (col4a6)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lmix04147
]
132958395 (col4a6)
00536 Glycosaminoglycan binding proteins [BR:
lmix00536
]
132958395 (col4a6)
Exosome [BR:
lmix04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
132958395 (col4a6)
Glycosaminoglycan binding proteins [BR:
lmix00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
132958395 (col4a6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
132958395
NCBI-ProteinID:
XP_060887140
LinkDB
All DBs
Position
23:18712180..18827516
Genome browser
AA seq
1711 aa
AA seq
DB search
MKFLICVIAVAVAVRSAHGGTNDGPCGGLDCSGGCKCNPEKGSRGRPGALGEVGQSGTEG
QRGSVGPMGPKGEKGHIGLKGPSGPKGDKGPMGVPGFQGNDGVHGHPGQQGSRGPSGFDG
CNGTRGEPGDSGFGIGRPGSPGFAGPTGPKGQKGEPRFISENGQSSIPGPPGVNGQPGIR
GPDGARGYVGPSGPDGFPGPPGPPGPPGLMGSRSDGYQGERGDKGDVGLPGPSGTPGDGS
LRSEQTLTIYKGDKGEEGRKGGRGYTGGPGRPGPFGYRGELGEKGIPGYPGGRGAPGFNG
PPGGLGQQGLRGIPGFPGQPGYIGPKGDQGEQGLPGPPAYVSNSGTSVQGEQGTPGYNGR
PGATGDQGPPGFPGPPGQPGIGGFGSGPGTPGFPGTPGPKGEKGGPGILGYGAEGLPGSS
GLPGPPGPPGPQGPTSLAVGPCIVYPEVSPRPKGSPGGLPISSTGEPGRPGPRGESGNTG
YKGYRGDPGDCACLGGGTSGLPGLPGSPGINGSPGFPGRKGEYGDSGSPGFGGVQGPPGR
AGERGYFGRKGEKGTSFYPDLGLGIKGELGFPGPRGPTGETGKPGRDGLPGFPGSPGTPG
DAGFGTVGEKGFPGYPGAKGLPGGPGEPGVGYIGTPGFRGADGDPGIPGLPGQPGLPGPR
GETGCGGVNDAREGTGQVLPCSIPGEDGDPGYPGIPGRPGPKGQPGFPGGTGRPGFDGPK
GDRGDPGFGGQPGPQGFPGPRGDSGLPGAPGQSFDGGRAKDGVPGRPGAKGQPGEVLGAT
PGAPGRDGLPGIPGDKGQPGTPGGPGFPGGDGRSGVPGRKGERGVDGLSGIPGPPGPPGE
PTGGITGRPGAPGNQGLSGPPGFPGRKGDRGDPGFPGPAGMKGTPGLPGTSGTPGPRGPP
GPPGPGTRDGIPGAPGLKGERGFPGLMGFPGLPGRPGSPGFPGQKGLNGGPGRDGYSGGP
GFPGLKGDRGYPGLPGPPAPVYRSEFLERGELGTPGSNGLPGFPGPRGDKGLPGLPGRQG
LPGLPGYAEQSKGQPGDRGFPGRPGSPGFPGPKGEAGINGFPGMSGPRGDDGGPGLPGNP
GESGRPGTKGLPGDSYGYPGGPGAKGQPGDPGFPGGRANDGAPGDNGFPGNPGYSGQKGA
PGEGGRPGIMGSPGFPGQKGLPGYPGRRGEDGIPGGPAGPGGPGAKGLPGPPGLDGLNGL
GGPKGLPGTPGVSAGGRPGAPGIPGQKGERGVSYPGVPGYPGPKGERGDSGGSGLPGFPG
RPGPPGPTVGSDIPGPLGDPGLPGLDGEYGFQGPPGRPGPPGPGSIQGDSGDSGLPGFPG
SPGRKGEPGLPGGPGLPSSFGFKGERGVTGYSGGPGLKGYPGDSGFYGNKGGKGLRGRPG
RKGIPGITLSVPPTDIRQPGEMGYPGDNGSPGGLGEPGQPGIPGRTGSKGPPGSVGKLGR
TGTGGLPGPIGDPGPPGFPGPTGEQGLPGTAGRPGSPGGVGRSYSIGYTLVKHSQDYQVP
MCPQGMAKLWDGYSLLYVEGQEKAHNQDLGQPGSCLPRFSTIPFLYCSPNEVCYYASRND
KSYWLSTTAPIPMMPVAEEQIRPYISRCSVCEAPSQAVAVHSQDMAIPTCPPGWRSLWIG
YSFLMHTAAGAEGGGQSLVSPGSCLEDFRATPFIECNGAKGTCHYFANKYSFWLTTVDPT
QEFVYSPAQETLKGGQERSRVSRCQVCSKLL
NT seq
5136 nt
NT seq
+upstream
nt +downstream
nt
atgaaattcctgatttgtgtgatagcagtcgccgtggcggtgagatctgcgcacggaggt
acaaatgacgggccatgtggaggactggactgcagcggcggatgcaagtgcaacccggag
aaaggcagcaggggtcgtcctggggctctcggggaggttggacagagcggaactgaggga
caacgtgggtctgtggggcctatggggcctaaaggagagaagggccacatcggactgaaa
ggaccatctggccctaaaggagacaaaggaccaatgggagtgcctgggttccaaggaaat
gatggagtacatggtcaccctggtcagcagggcagcagaggaccatcaggatttgacggt
tgtaacgggactagaggagaacctggagattccggctttggaataggaagacctggaagt
cctggatttgctggacctactgggccgaaaggacagaaaggagagcctcgattcatctca
gaaaacggacaatcgagtatcccgggaccaccaggagtcaacggtcaacctggaatcaga
ggtcctgatggtgcacgtggatatgttggtccaagcgggcccgatggtttccctggccca
cccggtcctcctggtcccccagggctcatggggagccgtagtgacggatatcaaggagag
agaggagacaagggcgacgtgggtcttcctggacccagtggtactcctggcgacgggtca
ctaagaagcgaacaaactctcactatctacaaaggagacaagggtgaagaaggccgaaag
ggcggcagaggatacactggcggtcctggccggcctggaccttttggctatcgtggtgaa
cttggagagaaaggcattccaggttaccctggtggaagaggtgctcctggttttaatgga
cctcctggtggtctaggacaacagggacttagaggtatcccaggattcccaggccaacca
ggatacataggaccgaagggtgaccagggagaacaaggactacccggacctcctgcttat
gtttctaatagtggcacctctgttcaaggagaacaaggtactccaggttacaatggccgg
cccggggccactggtgaccagggacctccaggattcccaggaccaccaggtcaacctgga
attggtggttttggatcaggtcctggaactccaggtttccccgggaccccaggcccaaag
ggagagaaaggtggcccaggtatactaggctatggcgcagaaggactccccggttcctca
ggacttccaggacctcctggccctcctggacctcagggtcctaccagccttgctgttggt
ccatgcatcgtctatccagaggtgtcccccaggcccaaaggttctcccggtggtttaccc
attagttccaccggagagcctgggagacctggccccagaggagagtcgggtaacacagga
tacaaaggctacagaggcgaccctggcgactgtgcctgcctaggtggaggcacctctggg
ttacctgggttgcctggatccccaggaattaacggcagccctgggtttcctggtcgaaag
ggtgaatatggtgactctggctctcctggctttggtggcgttcaaggacctccaggtcgt
gctggtgaaaggggatactttggacgtaagggagagaaggggacatctttctaccccgac
ctgggtttggggataaagggagagctcggatttcctggacccagaggacctacaggtgaa
actggaaaacccggaagagatggacttcctggctttcctggatcccctggaaccccaggt
gatgctggctttggaacagttggagagaaaggtttcccaggatacccaggcgccaagggt
cttcctggtggtcccggtgagcctggtgttggctacattggaacaccaggcttccgtgga
gctgatggagatcctggtatacctgggttaccaggacaaccaggtttacctggaccaaga
ggtgaaaccggctgtggaggggttaatgacgccagagagggaacgggccaagtgctgcct
tgctctattcctggtgaggatggagaccccggttaccctggtatcccaggacgaccaggt
ccgaaagggcagccaggtttcccaggaggcactggacgtccagggtttgatggccccaaa
ggagatagaggagaccctggttttggtggccaacctggacctcaaggttttccgggaccc
agaggggattctggacttccaggtgcaccaggacaatcttttgacggaggccgggcgaag
gatggagttccagggcgtcctggagccaagggtcagcctggagaagtgttaggagccaca
cctggagctccaggacgggatggtttgcctggaataccaggagacaagggccagccgggg
acccctggaggacctggatttcctggtggtgatggccgctctggtgttcctggacggaag
ggagagcgcggtgttgacggtctttctggtatcccaggccctccaggacccccaggcgag
ccgaccgggggtattactggtcggcccggagctcctggaaaccaaggactgagcggacca
ccaggtttccctggccgcaagggagatagaggagatccaggtttcccaggacctgcagga
atgaagggaaccccaggactgcctggtacctctggaactccagggccaagaggaccccct
ggaccacctggaccaggaaccagagatggaatccctggtgcaccaggacttaagggtgag
agaggtttcccaggattgatgggcttccctggactacctggtcgccctggatctccaggg
tttccgggacaaaaaggactgaatggagggcctggaagagacggttactccggtggccca
ggattccctggactgaaaggtgacagaggatatcctggtctccctggtccgcccgcacct
gtttatagatcagagtttcttgagagaggagaacttggaacccccggttccaacggtctt
cctggcttccctggacccagaggtgacaaaggtctgccaggtctgcctggtcgtcagggt
ctgcctggacttcctggttacgctgagcagagtaaaggacagcctggagatcgtggattt
cctgggagacctggaagcccaggcttccctggaccaaagggagaagctggaatcaatgga
ttcccgggcatgtctggaccaaggggtgatgatggtggacctggtcttcctggaaaccct
ggagaatcgggtcgtcctggtactaaaggtctacctggagatagttatggttatcctgga
ggtcccggtgccaaaggccagccaggagatccaggattcccaggcggtcgtgccaatgat
ggcgctcctggtgacaatggttttcctggaaatccaggttactctggacagaagggagct
cctggtgaaggaggacggcctggaataatgggctctcctggattccccgggcaaaagggc
ctgcccggttacccaggcagaaggggagaagatgggattcctgggggtcccgcgggtcct
ggaggtcctggagccaaaggtttgcctggaccccctgggttggatggacttaatggactt
ggtggacctaaaggccttcctggaaccccaggtgtgagtgcaggaggtcgcccgggtgct
cctggtattccaggccaaaagggagagagaggtgtctcctacccaggagttccaggctac
ccaggaccaaagggagagagaggagattcaggtggatctggactcccagggttccctggt
cgacccggacctcctggtccaactgtggggtctgatattcctggacctttgggagaccct
ggccttcctggactcgatggagagtatggtttccaaggtcctccaggtcgtcctgggcct
cctggtccaggctctattcagggagacagcggggactcaggtctcccgggcttccctgga
tcccccggcaggaaaggagaaccaggcctacctggaggcccaggactccccagcagtttt
ggtttcaaaggagaaagaggtgtgactggctacagcggaggtcctggtcttaaaggttat
cctggtgactctgggttctatggaaacaaaggaggaaagggactaagagggcgtcctggt
cgtaaaggcattcctggaatcacgctgtctgtgccgccgacagacatcaggcaacccgga
gaaatgggctatcctggtgacaacgggtcccctggtggtcttggagagcctggtcagcca
ggaatacccggacgcacaggttctaaaggccctccaggctctgtgggtaaacttggtagg
actggaactggtggtctgcccggacctattggtgaccccggaccacctggtttccctgga
cccactggagaacaaggtcttcctggtacagccggtcgtcccggctctcctggtggcgtc
ggtcgcagttacagcatcggctacactctggtgaagcacagccaggactaccaggtgccc
atgtgtccacagggcatggccaagctgtgggatggatacagtctgctgtacgtggagggc
caggagaaggcgcacaatcaggacctaggtcagccagggtcgtgcctccccaggttcagc
accatccccttcctctactgctcccccaacgaggtctgctactacgccagccgtaacgac
aaatcctactggctctctaccactgcaccaatacccatgatgcctgtggctgaggagcag
atacgcccttacattagcaggtgctctgtgtgtgaggctccatctcaggccgtggcggtc
cacagtcaggacatggcaatccccacctgtccacccggctggaggagtctctggatagga
tactccttcctcatgcacacagcagccggcgctgagggcggcggtcagtccctggtgtct
cccggttcctgcctggaggatttccgcgccacgcctttcatcgagtgcaacggtgccaag
ggtacctgccactacttcgctaacaagtacagcttctggctcaccaccgtggatccaacc
caggagtttgtctattcgccagcacaggagaccctgaagggaggccaggagcgctccaga
gtcagccgctgccaagtctgtagcaagctcttgtag
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integrated database retrieval system
