Labrus mixtus (cuckoo wrasse): 132958395
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Entry
132958395 CDS
T10666
Symbol
col4a6
Name
(RefSeq) collagen alpha-6(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
lmix Labrus mixtus (cuckoo wrasse)
Pathway
lmix04510
Focal adhesion
lmix04512
ECM-receptor interaction
lmix04820
Cytoskeleton in muscle cells
Brite
Exosome [BR:
lmix04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
132958395 (col4a6)
Glycosaminoglycan binding proteins [BR:
lmix00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
132958395 (col4a6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
132958395
NCBI-ProteinID:
XP_060887140
LinkDB
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Position
23:18712180..18827516
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AA seq
1711 aa
AA seq
DB search
MKFLICVIAVAVAVRSAHGGTNDGPCGGLDCSGGCKCNPEKGSRGRPGALGEVGQSGTEG
QRGSVGPMGPKGEKGHIGLKGPSGPKGDKGPMGVPGFQGNDGVHGHPGQQGSRGPSGFDG
CNGTRGEPGDSGFGIGRPGSPGFAGPTGPKGQKGEPRFISENGQSSIPGPPGVNGQPGIR
GPDGARGYVGPSGPDGFPGPPGPPGPPGLMGSRSDGYQGERGDKGDVGLPGPSGTPGDGS
LRSEQTLTIYKGDKGEEGRKGGRGYTGGPGRPGPFGYRGELGEKGIPGYPGGRGAPGFNG
PPGGLGQQGLRGIPGFPGQPGYIGPKGDQGEQGLPGPPAYVSNSGTSVQGEQGTPGYNGR
PGATGDQGPPGFPGPPGQPGIGGFGSGPGTPGFPGTPGPKGEKGGPGILGYGAEGLPGSS
GLPGPPGPPGPQGPTSLAVGPCIVYPEVSPRPKGSPGGLPISSTGEPGRPGPRGESGNTG
YKGYRGDPGDCACLGGGTSGLPGLPGSPGINGSPGFPGRKGEYGDSGSPGFGGVQGPPGR
AGERGYFGRKGEKGTSFYPDLGLGIKGELGFPGPRGPTGETGKPGRDGLPGFPGSPGTPG
DAGFGTVGEKGFPGYPGAKGLPGGPGEPGVGYIGTPGFRGADGDPGIPGLPGQPGLPGPR
GETGCGGVNDAREGTGQVLPCSIPGEDGDPGYPGIPGRPGPKGQPGFPGGTGRPGFDGPK
GDRGDPGFGGQPGPQGFPGPRGDSGLPGAPGQSFDGGRAKDGVPGRPGAKGQPGEVLGAT
PGAPGRDGLPGIPGDKGQPGTPGGPGFPGGDGRSGVPGRKGERGVDGLSGIPGPPGPPGE
PTGGITGRPGAPGNQGLSGPPGFPGRKGDRGDPGFPGPAGMKGTPGLPGTSGTPGPRGPP
GPPGPGTRDGIPGAPGLKGERGFPGLMGFPGLPGRPGSPGFPGQKGLNGGPGRDGYSGGP
GFPGLKGDRGYPGLPGPPAPVYRSEFLERGELGTPGSNGLPGFPGPRGDKGLPGLPGRQG
LPGLPGYAEQSKGQPGDRGFPGRPGSPGFPGPKGEAGINGFPGMSGPRGDDGGPGLPGNP
GESGRPGTKGLPGDSYGYPGGPGAKGQPGDPGFPGGRANDGAPGDNGFPGNPGYSGQKGA
PGEGGRPGIMGSPGFPGQKGLPGYPGRRGEDGIPGGPAGPGGPGAKGLPGPPGLDGLNGL
GGPKGLPGTPGVSAGGRPGAPGIPGQKGERGVSYPGVPGYPGPKGERGDSGGSGLPGFPG
RPGPPGPTVGSDIPGPLGDPGLPGLDGEYGFQGPPGRPGPPGPGSIQGDSGDSGLPGFPG
SPGRKGEPGLPGGPGLPSSFGFKGERGVTGYSGGPGLKGYPGDSGFYGNKGGKGLRGRPG
RKGIPGITLSVPPTDIRQPGEMGYPGDNGSPGGLGEPGQPGIPGRTGSKGPPGSVGKLGR
TGTGGLPGPIGDPGPPGFPGPTGEQGLPGTAGRPGSPGGVGRSYSIGYTLVKHSQDYQVP
MCPQGMAKLWDGYSLLYVEGQEKAHNQDLGQPGSCLPRFSTIPFLYCSPNEVCYYASRND
KSYWLSTTAPIPMMPVAEEQIRPYISRCSVCEAPSQAVAVHSQDMAIPTCPPGWRSLWIG
YSFLMHTAAGAEGGGQSLVSPGSCLEDFRATPFIECNGAKGTCHYFANKYSFWLTTVDPT
QEFVYSPAQETLKGGQERSRVSRCQVCSKLL
NT seq
5136 nt
NT seq
+upstream
nt +downstream
nt
atgaaattcctgatttgtgtgatagcagtcgccgtggcggtgagatctgcgcacggaggt
acaaatgacgggccatgtggaggactggactgcagcggcggatgcaagtgcaacccggag
aaaggcagcaggggtcgtcctggggctctcggggaggttggacagagcggaactgaggga
caacgtgggtctgtggggcctatggggcctaaaggagagaagggccacatcggactgaaa
ggaccatctggccctaaaggagacaaaggaccaatgggagtgcctgggttccaaggaaat
gatggagtacatggtcaccctggtcagcagggcagcagaggaccatcaggatttgacggt
tgtaacgggactagaggagaacctggagattccggctttggaataggaagacctggaagt
cctggatttgctggacctactgggccgaaaggacagaaaggagagcctcgattcatctca
gaaaacggacaatcgagtatcccgggaccaccaggagtcaacggtcaacctggaatcaga
ggtcctgatggtgcacgtggatatgttggtccaagcgggcccgatggtttccctggccca
cccggtcctcctggtcccccagggctcatggggagccgtagtgacggatatcaaggagag
agaggagacaagggcgacgtgggtcttcctggacccagtggtactcctggcgacgggtca
ctaagaagcgaacaaactctcactatctacaaaggagacaagggtgaagaaggccgaaag
ggcggcagaggatacactggcggtcctggccggcctggaccttttggctatcgtggtgaa
cttggagagaaaggcattccaggttaccctggtggaagaggtgctcctggttttaatgga
cctcctggtggtctaggacaacagggacttagaggtatcccaggattcccaggccaacca
ggatacataggaccgaagggtgaccagggagaacaaggactacccggacctcctgcttat
gtttctaatagtggcacctctgttcaaggagaacaaggtactccaggttacaatggccgg
cccggggccactggtgaccagggacctccaggattcccaggaccaccaggtcaacctgga
attggtggttttggatcaggtcctggaactccaggtttccccgggaccccaggcccaaag
ggagagaaaggtggcccaggtatactaggctatggcgcagaaggactccccggttcctca
ggacttccaggacctcctggccctcctggacctcagggtcctaccagccttgctgttggt
ccatgcatcgtctatccagaggtgtcccccaggcccaaaggttctcccggtggtttaccc
attagttccaccggagagcctgggagacctggccccagaggagagtcgggtaacacagga
tacaaaggctacagaggcgaccctggcgactgtgcctgcctaggtggaggcacctctggg
ttacctgggttgcctggatccccaggaattaacggcagccctgggtttcctggtcgaaag
ggtgaatatggtgactctggctctcctggctttggtggcgttcaaggacctccaggtcgt
gctggtgaaaggggatactttggacgtaagggagagaaggggacatctttctaccccgac
ctgggtttggggataaagggagagctcggatttcctggacccagaggacctacaggtgaa
actggaaaacccggaagagatggacttcctggctttcctggatcccctggaaccccaggt
gatgctggctttggaacagttggagagaaaggtttcccaggatacccaggcgccaagggt
cttcctggtggtcccggtgagcctggtgttggctacattggaacaccaggcttccgtgga
gctgatggagatcctggtatacctgggttaccaggacaaccaggtttacctggaccaaga
ggtgaaaccggctgtggaggggttaatgacgccagagagggaacgggccaagtgctgcct
tgctctattcctggtgaggatggagaccccggttaccctggtatcccaggacgaccaggt
ccgaaagggcagccaggtttcccaggaggcactggacgtccagggtttgatggccccaaa
ggagatagaggagaccctggttttggtggccaacctggacctcaaggttttccgggaccc
agaggggattctggacttccaggtgcaccaggacaatcttttgacggaggccgggcgaag
gatggagttccagggcgtcctggagccaagggtcagcctggagaagtgttaggagccaca
cctggagctccaggacgggatggtttgcctggaataccaggagacaagggccagccgggg
acccctggaggacctggatttcctggtggtgatggccgctctggtgttcctggacggaag
ggagagcgcggtgttgacggtctttctggtatcccaggccctccaggacccccaggcgag
ccgaccgggggtattactggtcggcccggagctcctggaaaccaaggactgagcggacca
ccaggtttccctggccgcaagggagatagaggagatccaggtttcccaggacctgcagga
atgaagggaaccccaggactgcctggtacctctggaactccagggccaagaggaccccct
ggaccacctggaccaggaaccagagatggaatccctggtgcaccaggacttaagggtgag
agaggtttcccaggattgatgggcttccctggactacctggtcgccctggatctccaggg
tttccgggacaaaaaggactgaatggagggcctggaagagacggttactccggtggccca
ggattccctggactgaaaggtgacagaggatatcctggtctccctggtccgcccgcacct
gtttatagatcagagtttcttgagagaggagaacttggaacccccggttccaacggtctt
cctggcttccctggacccagaggtgacaaaggtctgccaggtctgcctggtcgtcagggt
ctgcctggacttcctggttacgctgagcagagtaaaggacagcctggagatcgtggattt
cctgggagacctggaagcccaggcttccctggaccaaagggagaagctggaatcaatgga
ttcccgggcatgtctggaccaaggggtgatgatggtggacctggtcttcctggaaaccct
ggagaatcgggtcgtcctggtactaaaggtctacctggagatagttatggttatcctgga
ggtcccggtgccaaaggccagccaggagatccaggattcccaggcggtcgtgccaatgat
ggcgctcctggtgacaatggttttcctggaaatccaggttactctggacagaagggagct
cctggtgaaggaggacggcctggaataatgggctctcctggattccccgggcaaaagggc
ctgcccggttacccaggcagaaggggagaagatgggattcctgggggtcccgcgggtcct
ggaggtcctggagccaaaggtttgcctggaccccctgggttggatggacttaatggactt
ggtggacctaaaggccttcctggaaccccaggtgtgagtgcaggaggtcgcccgggtgct
cctggtattccaggccaaaagggagagagaggtgtctcctacccaggagttccaggctac
ccaggaccaaagggagagagaggagattcaggtggatctggactcccagggttccctggt
cgacccggacctcctggtccaactgtggggtctgatattcctggacctttgggagaccct
ggccttcctggactcgatggagagtatggtttccaaggtcctccaggtcgtcctgggcct
cctggtccaggctctattcagggagacagcggggactcaggtctcccgggcttccctgga
tcccccggcaggaaaggagaaccaggcctacctggaggcccaggactccccagcagtttt
ggtttcaaaggagaaagaggtgtgactggctacagcggaggtcctggtcttaaaggttat
cctggtgactctgggttctatggaaacaaaggaggaaagggactaagagggcgtcctggt
cgtaaaggcattcctggaatcacgctgtctgtgccgccgacagacatcaggcaacccgga
gaaatgggctatcctggtgacaacgggtcccctggtggtcttggagagcctggtcagcca
ggaatacccggacgcacaggttctaaaggccctccaggctctgtgggtaaacttggtagg
actggaactggtggtctgcccggacctattggtgaccccggaccacctggtttccctgga
cccactggagaacaaggtcttcctggtacagccggtcgtcccggctctcctggtggcgtc
ggtcgcagttacagcatcggctacactctggtgaagcacagccaggactaccaggtgccc
atgtgtccacagggcatggccaagctgtgggatggatacagtctgctgtacgtggagggc
caggagaaggcgcacaatcaggacctaggtcagccagggtcgtgcctccccaggttcagc
accatccccttcctctactgctcccccaacgaggtctgctactacgccagccgtaacgac
aaatcctactggctctctaccactgcaccaatacccatgatgcctgtggctgaggagcag
atacgcccttacattagcaggtgctctgtgtgtgaggctccatctcaggccgtggcggtc
cacagtcaggacatggcaatccccacctgtccacccggctggaggagtctctggatagga
tactccttcctcatgcacacagcagccggcgctgagggcggcggtcagtccctggtgtct
cccggttcctgcctggaggatttccgcgccacgcctttcatcgagtgcaacggtgccaag
ggtacctgccactacttcgctaacaagtacagcttctggctcaccaccgtggatccaacc
caggagtttgtctattcgccagcacaggagaccctgaagggaggccaggagcgctccaga
gtcagccgctgccaagtctgtagcaagctcttgtag
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