Labrus mixtus (cuckoo wrasse): 132958396
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Entry
132958396 CDS
T10666
Symbol
col4a5
Name
(RefSeq) collagen alpha-5(IV) chain
KO
K06237
collagen type IV alpha
Organism
lmix Labrus mixtus (cuckoo wrasse)
Pathway
lmix04382
Cornified envelope formation
lmix04510
Focal adhesion
lmix04512
ECM-receptor interaction
lmix04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
lmix00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
132958396 (col4a5)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
132958396 (col4a5)
09142 Cell motility
04820 Cytoskeleton in muscle cells
132958396 (col4a5)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
132958396 (col4a5)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lmix04147
]
132958396 (col4a5)
00536 Glycosaminoglycan binding proteins [BR:
lmix00536
]
132958396 (col4a5)
Exosome [BR:
lmix04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
132958396 (col4a5)
Glycosaminoglycan binding proteins [BR:
lmix00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
132958396 (col4a5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
132958396
NCBI-ProteinID:
XP_060887145
LinkDB
All DBs
Position
23:complement(18663992..18709144)
Genome browser
AA seq
1682 aa
AA seq
DB search
MNKDLKSLRQLAVPLLLFALSVAVQQADSAACHGCAGSKCDCSGQKGTKGEQGFPGLTGQ
PGVPGFPGPEGPIGPRGEKGSDGPHGLHGPKGIRGPSGLPGFPGTPGLPGLQGQDGPPGP
RGVPGCNGTKGERGYPGSGGIPGAQGLSGPPGLPGPKGDPGDVISTNRFGEQGGVGLPGL
PGVPGSSGPPGLQGPLGPPGPRGYEGRPGPPGLPGPKGNMGLNFQGPKGEKGDPGLPGPP
GPPGQVGEQKRPPEAVIQRGDKGDPGIPGPQGDPGFPGPPGPSGGNKGDKGEPGEAGKRG
KPGKDGDPGSPGFPGIKGESGLPGPPGRDGERGFKGDQGYPGPPGLVIGGQTGGRVGPKG
EPGFPGSPGHKGDRGPAGLSGPPGAPGLQTIGGGGQPGSPGFPGERGQKGDLGPPGLSLP
GPPGRSGAPGPQGQPGLPGPPGFSTSPQNCVSGEPGRPGLQGERGYPGETGQKGDKGDTC
VNCFGGTSAIPGPPGPAGQPGFPGGPGATGVKGDRGFPGTPGSVGPPGPSGPQGSSGYPG
EKGDPGDAVTVSGVRGEKGDSGFPGPPGLPGLDGRPGRDGQPGAPGPKGASGSLLVKGER
GLPGESGTPGNPGDRGPPGSPGFGPQGPSGEKGIPGVPGRPGGSGAPGAKGEPGLSIAEK
GLPGSRGLDGEPGLPGASGSPGQPGQNGFPGLPGAKGDPGLPGIGLPGPPGVKGFPGIPG
QPGAPAGPGRPGVDGLPGQPGFPGPKGEPGFGLPGPPGLPGVSGGKGFPGPKGDPGFPGG
PGGPGRNGFDGGPGSKGEPGTPGFPGGRGPPGSPTLGSLGPPGPTGSPGPIGPPGFPGSN
GGKGDPGPPGLDIPGLPGDRGSPGFPGSPGQVGIPGPPGGPGRDGLPGLPGQKGDIGSMG
SPGPSGGPGGPGGPGGPGLKGEPGFPGRDGGPGGPGGKGERGEPGLQGPPGVSQPPSVTK
GTKGDPGLPGSPGLPGQKGIPGLSGDPGLSGSDGRPGLPGPSGPKGDPGIPGGPGGPGGP
GPKGSMGEMGFPGPSGQKGLPGQPGRSAAPGQPGGPGYPGAKGEPGSAGVGPPGQGGPKG
EPGQPGFPGSPGLKGGPGLPGGSGLPGGPGPKGDPGLPGFQGSPGIPGPKGLDGGPGGPG
LTGSPGRPGEPGRSGAPGLPGEKGQAGRDGIPGPAGVKGEPGLPGYGGPGASGLPGLPGA
KGDPGLPGPSGSSGFPGTKGEAGFPGSPGPAGNSGPPGPLGLALQGPKGLSGPPGPPGRA
GAPGPEGPRGPAGTGGVRGEKGNPGTPGQPGFPGSKGDSGVPGFPGPSGQPGGSGAKGDI
GLPGVPGFPGPKGDSGLPGGNGLPGDPGDVGPEGPRGDPGAPPTPIVVKGERGPPGPVGL
NGGRGSPGSPGRDGLPGPSGEPGNPGPEGPPGFSGPSGRKGDTGPAGQPGQRGYPGPPGS
DGPQGPPGLPGSVSAAHGFLITRHSQGQDVPFCPEGTNPIYDGYSLLYVQGNERAHGQDL
GTAGSCLRRFSTMPFMFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPLTGESIKPFISR
CSVCEAPAMVIAVHSQTIQIPTCPSNWEALWIGYSFMMHTSAGAEGSGQALASPGSCLEE
FRSAPFIECHGRGTCNYYGNSYSFWLATVEQSEMFRKPQSETLKAGNLRTRVSRCVVCMK
RT
NT seq
5049 nt
NT seq
+upstream
nt +downstream
nt
atgaataaagacttgaagagcctgcgacagctcgccgtgcctctgcttctcttcgccctg
agcgtcgcggtgcagcaggcggactctgcggcttgccacggctgtgcgggatccaaatgt
gactgcagtggacaaaaaggaaccaagggtgaacagggtttcccagggctcacaggacag
ccaggagtcccaggattccccggacctgagggaccaatcggaccccgaggagagaagggt
agcgatggacctcatggactgcatggtccaaaaggaataagagggccgtctggattgcca
ggatttccaggaactccaggacttccaggactccaaggacaagatggaccaccgggccca
agaggagtgccgggctgtaacgggacaaagggtgaaaggggttaccccggaagtggagga
atccccggagctcagggactgtctggtccacctggtctgccaggaccgaagggagaccct
ggtgatgtgatctccaccaaccgttttggagagcaaggaggagttggactgcccgggtta
ccaggagttcctggctcctctggaccccctggtttacaaggcccactcggcccaccagga
cccagaggctatgagggtcgtccaggtcctcctggtctccctggaccaaagggaaacatg
ggattgaacttccaaggacccaaaggagagaagggtgacccaggtttgccaggacctcct
ggtcctcccgggcaggtgggagagcagaagagaccacctgaggcggtgattcagagagga
gacaagggtgacccaggtattccaggtcctcaaggtgatcccggctttccaggaccccct
ggtccctcaggtggcaacaaaggagacaagggagaaccaggagaagcaggcaaacgaggc
aaaccaggcaaagatggtgaccctggttccccaggattccctggaatcaaaggagagtca
ggccttccaggtcctccaggcagggacggagagagaggatttaaaggtgatcaaggatac
ccgggcccacctggactggtgattggtggacagacaggaggtcgagtcggtcctaaaggt
gagcctggattccccggatcacccggacataaaggagacagaggaccagcaggtctatca
gggcctccaggagctccaggacttcaaactattggtggaggtggtcagccaggatctcca
ggcttccccggagagagaggtcagaagggagacttgggccctccaggtctgtcactgcca
ggacctccaggtcgttcaggagctcctggtcctcagggtcaaccaggacttcctggacct
ccgggcttttccacatcgccacaaaactgtgtctctggagagcctgggcgtcctggtctg
cagggagagagaggttaccccggagagacaggacagaaaggtgacaagggcgacacctgt
gtgaactgctttggtggtaccagtgccattccaggacccccaggacctgcaggacagccc
ggtttccctggagggcctggtgccacaggtgttaaaggagaccgaggatttccaggaaca
ccaggttctgttggaccccctggtccgtccggtcctcagggttcttcaggataccctgga
gagaaaggagatccaggtgatgcagtcacagtgagcggtgtgaggggggagaagggtgac
agcggcttccctggaccacctggtctacctggactggatggtcgacctggtcgtgacgga
cagcctggagcgccgggacccaaaggagcttctggttccctgctggtgaaaggagaacga
gggctccccggtgagtcaggtaccccaggtaatccaggagacaggggacctccagggtcc
cctggctttggacctcagggcccttcaggagagaaaggtatcccaggagtcccaggaaga
cctggaggttctggcgcaccaggggctaaaggtgaaccaggcctgtcaatcgcagaaaaa
ggcttaccaggatccagaggactggatggagagccaggattacctggtgcatcaggtagc
cctggtcagcccggacaaaatggtttccctggtttaccaggagcaaagggtgatcctgga
ctcccaggaattggacttccaggacccccaggagtgaaaggattcccaggtattcccggc
cagccaggagctcccgcaggaccaggcagaccaggtgtagatggactccccggccagcct
ggttttcctggacccaagggcgaacccggatttggcctccctggccccccaggtttaccc
ggagtatctggaggtaaaggtttccctggaccaaagggagatccaggtttccctggtggt
cctggtggtcctggccgaaatggatttgatggcggtcccggcagtaaaggtgagcctggt
acaccaggttttcctggaggccgtggcccacctggatcccccacccttggctcactgggt
ccacccggccctactggcagccctggcccaataggaccacccggattccctggatcaaac
ggagggaagggagaccctggccctccaggtctagacatcccaggtctcccaggagacaga
ggaagtcctggtttcccaggttccccgggacaagtcggtatcccaggacctccaggggga
cctggaagggatggcctgccgggacttcctggtcagaaaggagacataggtagcatggga
tctccaggaccttcaggaggaccaggtggcccaggaggacctggtggacctggacttaaa
ggtgaacctggattcccgggaagagacggtggaccaggcggccccggtggcaagggagag
agaggtgagcctggtctccagggacccccaggagtcagtcagccgccatcagttacaaag
ggaaccaaaggagatcctggactaccaggttcaccaggtcttccaggtcagaaaggaatc
ccaggtctctctggtgaccctggactgtcaggatcagatggccgcccaggactccctgga
ccttcaggtcctaaaggagatcctggcatcccaggaggcccaggtggtcctggaggtcca
ggacctaaaggcagcatgggagaaatgggatttccaggaccatcagggcagaaaggtcta
ccaggtcagccaggtaggtctgcagccccaggacagcctggaggccctggttaccctggt
gccaaaggtgaaccaggttctgctggtgtaggaccacccggacaaggtggaccaaagggt
gaaccaggacagccagggttcccaggaagtccagggctgaaaggaggtccaggattaccc
ggtggctcaggtttaccaggagggccaggccccaagggagaccccggcctcccaggattc
caaggttcacccggcatccccggtccaaagggtcttgatggtggacctggtggcccaggt
ctcacaggatccccaggtagaccaggagaacctggtaggtcaggagcacccgggcttcct
ggagagaagggtcaggcaggtcgggacgggatcccgggaccagctggagtcaaaggagaa
ccaggacttcctggttatggaggtcccggtgcctctggtcttccagggttgccaggtgca
aagggtgacccaggtctccccggtccatctggcagttctggtttcccaggcactaaagga
gaggctggtttccctggtagtccaggtcctgctggcaacagtggcccacctggacctctt
ggacttgctctgcagggccccaaagggctctcaggaccacctggaccccccggaagagca
ggtgcacctggcccagagggtccgcgtgggcccgcaggaacaggcggcgtcaggggagag
aagggtaaccctggcactccaggccagccaggcttccccggatcgaaaggagactctggt
gttcctggattcccaggtccgtctggtcaacctggtggtagtggtgcaaagggagacatc
ggtcttcctggggttcctggattccctggaccaaaaggtgattcaggcctccccggtggt
aatgggcttcctggagatcctggagatgttggacccgaaggtcctcgtggtgaccccggt
gcgcctccaactccaattgtggtgaagggagagaggggtccccctggtcccgtgggcctg
aacggtggtcggggatcccctggttctcctgggcgtgacggacttccaggtccatctggt
gaacctggaaatcctggtccggagggtccacctggcttcagcggcccatcaggcaggaag
ggagacacaggaccagccggtcagcctggtcagcgtggttaccctggtcctcctggttca
gatggtcctcagggtcctcctggtctaccaggatcagtctctgcagctcatggcttcctc
atcaccagacacagccagggtcaggacgttcccttctgtcccgaaggaacaaaccccatc
tacgatggatactcactgctgtacgtgcagggcaatgagagagcacatggacaggacctt
ggcacggccggcagctgtctgcgcagattcagcacaatgcccttcatgttctgcaacatc
aacaacgtgtgcaactttgcttctcgtaatgactattcctactggctgtctacgcctgag
ccaatgcccatgtcaatggcccccctcaccggagagagcatcaagccgttcatcagcagg
tgttcagtgtgtgaagctccggccatggtgattgcagtccatagtcagaccatccagatt
cccacctgcccgtcgaattgggaagccctgtggatcggatactcctttatgatgcacacc
agtgccggtgcagagggctccggtcaagctctggcctcacccggctcctgcctggaggag
ttccgcagcgctcccttcatagagtgccatggcagagggacttgcaactactacggcaac
tcctacagcttctggttggccactgtagaacagagcgagatgttcaggaagccacagtca
gagactctcaaggcgggtaacctacgaacacgcgttagccgctgcgtcgtctgcatgaag
aggacgtaa
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integrated database retrieval system
