Labrus mixtus (cuckoo wrasse): 132972840
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Entry
132972840 CDS
T10666
Symbol
tgfbrap1
Name
(RefSeq) transforming growth factor-beta receptor-associated protein 1 homolog
KO
K20177
vacuolar protein sorting-associated protein 3
Organism
lmix Labrus mixtus (cuckoo wrasse)
Pathway
lmix04148
Efferocytosis
Brite
Membrane trafficking [BR:
lmix04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
132972840 (tgfbrap1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
Prok-RING_1
Motif
Other DBs
NCBI-GeneID:
132972840
NCBI-ProteinID:
XP_060891940
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Position
1:17596813..17606867
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AA seq
872 aa
AA seq
DB search
MSVKAFELVPAVERDLLMGDKARINIECIECCGKHLYLGTNDCFIHHFLLDEVTSSKGKL
SYSAQKLLHKYLGLKKPVAELHAASALERLIVLCDAIVFLVDMVTLETVPSAAGGGAKIR
GVTAFCINENPVNGDPFCVEMCVLSSKRRTVQIYMVYEDRVQLVKEVNTPEQPCAVSLDG
YFLCLALATQYMILNYNTGASQDLFPYSSEERRPIVKRIGREEFLLAAPGGLGMFANAEG
VSQRAPVNWSESIIGAAVCFPYVVALDDSFITIHSMLDQQLKQTLSFRDGHILQDFEGKV
ILASSKAVYVLVPLPLERQIQDLLASHRVEEALILTEGAQRNIPKDKFQILHKRILQQAG
FIQFGQLQFLEAKEHFRKGQLDVRELISLYPLLLPASSSFTRCHPPLHEFADLNHLAQGD
QEKVLRCKRFLITYLGEVRSTEVANGCREDVDTALLKLYAEQDHESLLDLLASDNSCLLA
DSVPWLEKYHKYFALGLLYHYNGQDSAALQMWIRVVDGELQDSTRSGLYEYIVDFLCSSS
DLDIIWKYADWALRKNPTTGVHIFTKRPNSKHLSELNPDDVITHLEKHNQSLLLYLEHLV
LERKTQKEKFHTHLAVLHLEKVLCLLSESPKDEEQITRARERLQALLRESHLYNVQVLLG
KLENCEQLLLERATLHGKLDEHDKALHILVHKLRDFPSAEAFCIWASSSRDSVYRQQLFH
LLLEVYLKGNQKVAAGSNGDLEMAAVDLLNRHGEVFDAVQVLRMLPEGWSLQLLRPFLGR
AVRASMHACHTSQIALGLSYSENLQLLHDRLKERKKPIFVSTKKGCHLCHNTFSEPDVVC
LPGGVPVHKHCVAQRVRDSPTKRQLTNSSNYT
NT seq
2619 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtgaaggcctttgagcttgtccccgctgtggagagagatctcctcatgggcgac
aaggctcgcatcaacatcgagtgcatcgagtgctgtggaaagcacttgtacctggggacc
aatgactgctttatccatcacttcttgctcgacgaagtcacttcctccaaggggaagctg
agctactcggctcaaaagctgctgcacaaatacttgggccttaagaaacccgttgctgag
ctgcacgccgcctctgctttggagcgtctgatagtgctctgcgatgccatcgtgttcctt
gttgacatggtgacactggagaccgtgccctcggcggcaggaggcggggctaaaatcaga
ggtgtgacagctttctgcatcaatgagaatcccgtgaatggcgatccgttctgtgtggaa
atgtgcgtgctctcatccaaacggcgaacagtgcagatttacatggtgtacgaggacaga
gtgcagctggtgaaagaggtgaatactcctgagcagccgtgtgccgtcagtcttgacggt
tacttcttgtgcctggccctggctacacagtacatgattctgaactacaacacaggagcc
tcccaagacctcttcccttacagcagtgaggagaggagacccattgtaaagaggatcggc
agggaggagttccttttagcagcacctggtggtctgggaatgtttgcgaacgcagaaggc
gtttctcagcgggctccagtgaactggtcagagagcatcatcggtgctgctgtgtgtttc
ccttacgtggtggccttggatgacagcttcatcaccatccacagcatgctggaccaacag
ctgaaacagaccctttcattcagggatggacacattctgcaagactttgaaggaaaggtc
atcctggcgtccagtaaggccgtatacgtcctggtccccctgcctctggagaggcagatc
caggacttactggccagtcacagagtggaggaggcgctcatcctcacagagggggctcag
agaaatattcccaaagacaagttccagattttgcacaaaagaatccttcagcaggcaggt
ttcatacagttcggccagctgcagttccttgaagcaaaagagcacttcaggaagggacag
ctggatgtgcgggagctgatatctctctacccattgctgctgccggcgtcctcttcattc
actcgctgccaccctcctctccacgagtttgcagatctgaatcacctcgctcagggggac
caggaaaaagtcctgcgatgcaaaagattcctcatcacttatttgggagaggtacggagc
acagaggtggctaatggctgtcgggaagacgtggacaccgcgctgttaaagctttacgct
gagcaggatcacgagagccttctggacctgctagcttcagacaactcctgcctgctagca
gacagtgtgccatggctggagaaatatcacaaatattttgctcttgggctgctctatcat
tataacggtcaggattcagcagcacttcagatgtggattcgggtggtagatggggaactg
caagactctacaagatctggcctttatgagtacatcgtggacttcctctgctccagctca
gatctggacatcatctggaagtatgcagactgggccctgcgcaagaatcccaccacaggt
gtccacatctttactaagaggcctaacagtaaacacctgtcagaattgaaccctgatgat
gtcatcactcacctggaaaaacacaaccagtcgctgcttctctacctggaacacctggtg
ctggagagaaagacacagaaagagaagttccacacacatctggcggtgttgcatttggag
aaggttttgtgtttgctgtcagagtcaccgaaagatgaagagcagataaccagagccaga
gagaggctccaggccctgctcagggagtcacacctgtacaatgtgcaggttcttttagga
aagctggagaactgtgaacagctgctgctagagcgtgcaacactacatggaaaactggac
gagcatgataaagcacttcacatattggttcacaagctcagagacttcccgtctgcagag
gccttctgtatatgggcctcgtcttctcgcgattctgtttacagacagcagctgtttcac
ctgctcttggaggtttatctaaaggggaaccagaaagtggctgcaggtagcaatggagat
ctggagatggccgccgtggacctccttaatcggcacggcgaggtgttcgatgcagttcag
gtcctgcgcatgctccctgagggctggtctctgcagctgctgcggccctttctggggcga
gctgtcagggccagcatgcatgcctgccacacctcccagatcgcactgggactgtcctac
tctgaaaaccttcaactgctgcatgacaggctgaaagagcggaagaagccaatctttgtg
tccacaaagaagggatgccacctttgccacaacaccttcagcgagccagacgtggtgtgt
ctgccgggtggagtgcctgtccacaagcactgtgtcgcccagagagtaagagactctccc
acaaagagacagttaactaatagcagtaactatacgtga
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