Labrus mixtus (cuckoo wrasse): 132974008
Help
Entry
132974008 CDS
T10666
Symbol
snrnp200
Name
(RefSeq) U5 small nuclear ribonucleoprotein 200 kDa helicase
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
lmix Labrus mixtus (cuckoo wrasse)
Pathway
lmix03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lmix00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132974008 (snrnp200)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lmix03041
]
132974008 (snrnp200)
Enzymes [BR:
lmix01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
132974008 (snrnp200)
Spliceosome [BR:
lmix03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
132974008 (snrnp200)
Complex C
U5 SnRNP specific factors
132974008 (snrnp200)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
WHD_SNRNP200
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_30
SWI2_SNF2
PhoH
Sigma54_activ_2
DUF603
Motif
Other DBs
NCBI-GeneID:
132974008
NCBI-ProteinID:
XP_060893743
LinkDB
All DBs
Position
5:10780182..10795872
Genome browser
AA seq
2136 aa
AA seq
DB search
MADVTARSLQYEYKANSNLVLQADRSLIDRTRRDEPTGEVLSLVGKLEGTKMGDKSQRTK
PQKLEERRDKRRKRDEDRHDINKMKGFTLLSEGIDEMVGIVYKPKTKETRETYEVLLSFI
HAALGDQPRDILCGAADEVLAVLKNDKMRDKERRREVEQLLGPADDTRYHVLVNLGKKIT
DYGGDKDLQNMDDNIDETYGVNVQFESDEEEGDEDQFGEVRDEHSDEDSEGEEAGVGCAL
SANLGATGDVMTVKKKDLHPRDIDAFWLQRQLSRFYDDAIVSQKKADEVLEILKTASDDR
ECENQLVLLLGFNTFDFIKVLRQHRRMIQYCTMLASAQSEAEKERIIGKMESDQELSKIL
YQLQETEKEDIIREERSRRERLRKSRVDDLEAMDTDHGESMTPRQLLDLEDLTFTQGSHF
MANKRCQLPDGSFRKQRKGYEEVHVPALKPKPFADDEVLVPIEKLPKYAQAGFEGFKTLN
RIQSKLFKTTMETDENLLVCAPTGAGKTNVALMAMLREIGKHINLDGTINVDDFKIIYIA
PMRSLVQEMVGSFSKRLASYGITVSELTGDHQLCKEEINATQIIVCTPEKWDIITRKGGE
RTYTQLVRLIIIDEIHLLHDDRGPVLESLVARTIRNVELTQEDVRLLGLSATLPNYEDVA
TCLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVL
VFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGF
AIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWT
ELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVSKLPDMLN
AEIVLGNVQTVKDAVNWLGYTYLYVRMLRNPTLYGVSHDDRSIDPLLERRRTDLIHTAAN
VLDKNSLVKYDKRTGSFQVTDLGRIASHFYITHDSIQTYNQLLKPTLSEIELFRVFSLSS
EFRNITVREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAYISQLKLEGFALMADMV
YVTQSAGRLMRAIFEIVLNRGWAQLTDKTMNLCKMIDKRMWQSMSPLRQFKKLPEEVIKK
IEKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHQFAKLDLAVHLQPITRSTLKVEL
TVTPDFQWDDKIHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLVTFFVPVFEPL
PPQYFIRVVSDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNSAFEALYQ
NKFPFFNPIQTQVFNAVYNSDDNVFVGAPTGSGKTICAEFAILRMLLHNAEGRCVYITPM
EALAEQVFVSWHQKFQDILNKKVVLLTGETSTDLKLLGKGDIIVSTPDKWDILSRRWKQR
KNVQNVSLFIVDETHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVAH
WLGCSTTATFNFHPNVRPVPLELHIQGFNVSHTHTRLLSMAKPVYHAIMKHSPSKPAVVF
VPSRRQTRLTAIDILTFCAADVVPQRFLHCTEKDLAPFLDKINDPTLKETLANGVGYLHE
GLSATERRIVEQLFNSGAVQVVVSSRSLCWGINISAHLVIVMDTQYYNGKIHAYVDYPIY
DVLQMVGKANRPMLDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCLHDHFNAEIVT
KTVENKQDAVDYLTWTFLYRRMTQNPNYYNLQGMSHRHLSDHLSELVEHTLHDLEQSKCI
SIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKIRGLIEIISNAAEYKHIPIRH
HEDTLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLSAELQSDTEEILSKAVRL
IQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPFFTSEHIKRCTDQGVESI
FDIMEMEDEDRTALLQLSDAQMADVARFCNRYPNIELSYEVAEKENIKSGSPVLVQVQLE
REEEVTGPVIAPLFPQKREEGWWVVIGDPKSNSLISIKRLTLQQKAKVKLDFVAPAVGVH
NYTLYFMSDAYMGCDQEYKFSADVKEADSEGDSDSD
NT seq
6411 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgtgactgcacgtagcctgcagtacgagtacaaagcgaactcaaacttggtg
ttacaagccgatcgctctctgatcgatcgcacacggagggatgaacccaccggagaggtg
ctgtccctggtggggaagctggaggggacaaagatgggagacaagtctcagaggaccaaa
cctcagaaactggaggagagacgagacaagcgccgaaagagagacgaggacaggcacgat
atcaacaaaatgaagggctttaccctcctgtctgagggcattgatgaaatggtgggcatt
gtgtacaagcctaaaaccaaagaaaccagagagacctatgaggtgttgctcagcttcatt
catgctgctttgggagatcagccacgtgatattctttgtggagcggcagatgaggtttta
gcagtgttgaagaatgacaaaatgagggacaaggaaaggcggcgtgaagtagagcagctt
cttggaccagctgatgacacacgataccatgtgttggttaatctgggcaagaagatcaca
gactacggaggagacaaggatttacagaacatggatgacaacatcgatgaaacgtatggt
gtgaatgtgcagtttgaatccgatgaggaggagggggatgaagaccagtttggagaggta
cgagatgaacactcggatgaagacagtgaaggcgaggaggcaggtgtgggctgcgctctt
tcagcaaatcttggtgccacaggtgatgtgatgacagtgaagaaaaaagatctacatcct
cgagacattgacgccttctggctccagcgtcagctcagccgtttctatgatgatgccatt
gtttcccaaaagaaagctgatgaggtcttagaaatccttaagactgccagcgacgatcga
gaatgtgagaaccagctggtgttgttgctcggtttcaacacctttgacttcatcaaagtc
ctccgccaacaccgtcgcatgattcagtattgtaccatgctggcgagtgctcagagtgag
gcagaaaaggagcggatcattggaaagatggagtccgatcaggaattgtcaaaaattctt
taccagctacaagagacggagaaggaagacatcattcgggaggagcgatctcgcagagag
cggctgaggaagtctcgggttgatgacttagaagcgatggacactgaccatggagagtcc
atgacccctcgacagctgctggacctcgaggacctgacgttcacacaggggagtcatttc
atggccaacaagcgttgccagctgccagacggctcattccgcaaacaacgcaaaggttat
gaagaagttcacgtgcctgctctaaaacccaagcccttcgctgatgatgaggtgcttgtc
cccattgagaagttgcccaagtacgcacaggctggatttgaagggttcaaaaccctgaat
cgcatccagagcaagctgttcaagaccaccatggagacagatgagaacctgttggtgtgt
gcacccacgggagctggtaagaccaatgttgctctgatggcaatgctgagagaaattgga
aagcatattaacctggatggaaccatcaatgtggacgacttcaaaatcatctacatagct
cccatgcgctcactggtacaggagatggtgggaagctttagtaagcgcttggcaagttac
ggcatcacagtatccgagctgacaggagaccaccagctctgcaaagaggagattaatgcc
acacaaatcatcgtctgcacacctgagaaatgggacatcatcacccgtaaaggtggagag
cgtacctacacacagctagtgcggctcattatcattgatgaaatccatctgcttcacgat
gaccgtggacccgtgctggaatctctggtggcgaggacaatccgtaacgtggagctgacc
caggaggacgtgcgtcttcttggtctcagtgccacactgcccaactacgaggatgtggct
acctgcctgcgtgtagatcctgccaaggggctcttctactttgataacagtttccgtccc
gtgccgctggagcagacttatgtcggtatcacagagaagaaggccatcaagcgtttccag
atcatgaatgagatcgtctatgaaaagatcatggagcatgctggaaagaaccaggtgctg
gtatttgttcattctaggaaggaaacaggaaagacggccagggccattagagacatgtgt
ttagagaaggacacactcggtcttttcctcagggaaggttcagcttctactgaagtgttg
agaacggaggcggagcagtgcaagaatctagagctgaaggatctgctgccttatggcttc
gctatccaccacgctggtatgaccagagtggaccgtacgctggtggaggatctgttcgct
gatcgccacatccaggttctggtgtccacagcgactctggcttggggtgtgaacttgcct
gcacacactgtgatcatcaaagggactcaggtctacagcccagagaaaggcaggtggacc
gaactcggtgccctggacattttacagatgcttggtcgagctggccgtcctcagtatgac
accaagggagagggaatcctgatcacatcacacggagagctgcagtactatctctctctg
ctcaaccagcagctgcctatagagagtcagatggtgagcaagctgccggacatgctcaac
gcagagatcgtgctgggcaacgtgcagaccgtaaaggatgcagtgaactggcttggttac
acatacctgtatgtgcgcatgctccgaaatcccactctgtacggtgtctcgcacgatgac
cggagtatagaccccctgctggagagacgcaggacagatctgattcacactgcagccaac
gtcctggacaagaacagcctcgtcaaatacgacaaaaggactggcagcttccaggtaaca
gacctgggacgcattgccagtcacttctacatcacccacgactccatacaaacttacaac
cagctgctgaagcccactctcagtgagattgagctcttcagggtcttctcactctcctca
gagttcaggaacatcactgtgagagaggaggagaagctagagctgcagaagctgctggaa
agagttcctattcctgtgaaggagagcatcgaggagcccagtgctaagatcaatgtgctg
ctccaggcgtacatctctcaacttaaactggaaggctttgcgctcatggcagacatggtg
tatgtcacacagagtgctggaaggttaatgcgcgccatatttgagattgtactcaacaga
ggctgggctcagctgacagacaagaccatgaatctttgcaagatgattgacaagagaatg
tggcagtccatgtctccactgagacagttcaagaagcttccagaggaagtgatcaagaag
atcgagaagaagaatttcccctttgagcgtctctacgacctcaaccacaatgagattggt
gagctgatcagaatgcctaaaatgggaaagaccatccacaagtatgtccaccagttcgct
aaactggacctggctgtccatctgcagcccatcacccgctccacactgaaggtggagctc
accgtcacgcctgacttccagtgggatgacaagattcatggatcctctgaagcgttctgg
atcctggtggaggatgtggacagtgaggtcatcctgcaccacgagtacttcctgctcaaa
gcaaagtacgcacaggacgaacacctggtgaccttctttgtcccggtgttcgagcctctg
cctccgcagtacttcatccgtgttgtatcagatcgatggctctcctgcgagactcagctc
cctgtatccttccgtcacctcatcctgcctgagaagtaccctccacctacagagctgctg
gacctgcagccgctgcccgtcaccgctctcaggaactctgccttcgaggctctctaccag
aacaaattccccttcttcaaccccatccagacacaagtgttcaacgcagtttacaacagt
gatgacaacgtgtttgtgggagctcccaccggcagtggaaagacaatctgtgctgagttt
gctattctgaggatgctgctgcacaacgcagagggtcgctgtgtctacatcaccccgatg
gaagcactggctgaacaggtgtttgtcagctggcaccagaagttccaggacatcctgaac
aaaaaggtggtgctgctgacaggagaaaccagcacagacctgaagctcttgggaaaaggt
gacattattgtcagtacccccgacaaatgggacatcctgtcccgtcgctggaagcagagg
aagaacgtgcagaacgtcagcctcttcattgtggatgagacacatctcattggaggagaa
aacggacctgtgctagaggtcatctgctccagaatgaggtacatttcatcccagatcgag
cgtcccatccgcatcgtggccctcagctcatccctgtccaacgccaaagatgtggctcac
tggcttggctgcagcaccacagcaacattcaacttccaccccaacgtcagacctgttcct
ctggagctccacatccagggcttcaatgtgagtcacactcacactcgcctgctgtccatg
gctaagccagtctatcacgccatcatgaagcactcgccctccaagcctgccgtggtgttc
gtcccctcgcgcagacagactcgcctcacagccatcgacatcctcactttctgtgccgcc
gatgtggttcctcaaaggttcctgcattgcacagagaaagacctcgctcctttcctggat
aagataaacgacccaactctgaaagaaactcttgcaaatggcgtgggctacctgcacgag
ggcctctcagcaactgagcgaagaattgtggagcagctcttcaactcaggcgctgttcag
gtggtggtgtcctcccgatcactctgctggggcattaatatctctgcacacctcgtcatc
gtcatggacacacagtactacaatggaaaaatccatgcatatgtggactatcccatatat
gatgtcctccagatggtgggtaaggccaacagacccatgctggatgatgaggggcgctgc
gtcatcatgtgtcagggctccaagaaggatttcttcaagaagtttctgtacgagccgctg
cctgtggagtctcacttggaccactgcctccacgaccacttcaacgctgagatcgtcacc
aaaaccgtggagaacaagcaggacgccgtcgactacctgacgtggacattcctctaccgc
cgcatgacccagaaccccaactactacaacctgcaaggcatgtcccatcgtcacctgtca
gaccacctgtctgagctggtggaacacacgctacacgacctggagcagtccaagtgcatc
agcatagaggacgagatggatgtagcaccgctcaacttgggcatgatcgctgcctactac
tacatcaactacaccaccatcgagttgttcagcatgtcccttaatgccaaaacaaagatc
cgagggttgatcgagatcatctcaaacgctgcagagtacaagcacattcccatcagacat
cacgaggacactcttctccgacagttggcacagaaggttccccacaaactgaacaacccc
aagtttaacgacccccacgtgaagacaaacctgctgctgcaggctcatctctccaggatg
cagctgagtgctgagctgcagtctgacacggaggagatcttgagcaaggctgttcgtctt
atccaggcctgtgttgacgtgttgtccagtaatggctggctgagtcctgcgctagcagcc
atggagctggctcagatggtcactcaggccatgtggtccaaggactcctacctcaaacag
ctgcccttcttcacctcagagcacatcaagcgctgcacagaccagggtgtggagagtatc
tttgacatcatggagatggaggatgaagatagaaccgccttgctgcagctctcagacgct
cagatggccgacgtggctcgcttctgtaaccgctaccccaacatcgagctgtcgtacgaa
gtggctgaaaaggaaaacatcaagagtggcagtccagttctggtccaggttcagctggag
agagaggaggaggttacaggacccgtcattgcacctctcttcccccagaaacgtgaggag
ggctggtgggtggtgatcggagaccccaaatcaaacagtctcatctccatcaagaggctg
actctgcagcagaaggctaaggtcaagttggactttgtcgcaccagccgtgggcgttcat
aactacacgctttacttcatgagtgacgcatacatgggctgtgaccaggagtacaagttc
agcgccgatgtgaaggaggctgacagcgagggagacagtgactcagactaa
DBGET
integrated database retrieval system
